IL_3JCS_086

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

3JCS|1|2|A|643, 3JCS|1|2|C|1422

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66591.1

Basepair signature

cWW-R-cWW

Number of instances in this motif group

10

Unit IDs

3JCS|1|2|G|642
3JCS|1|2|A|643
3JCS|1|2|A|644
*
3JCS|1|2|U|1420
3JCS|1|2|A|1421
3JCS|1|2|C|1422
3JCS|1|2|C|1423

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain B

ribosomal protein L3

Chain T

ribosomal protein L22