IL_3JCS_096

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUUUAG*CACCGU

Length

13 nucleotides

Bulged bases

3JCS|1|2|U|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68721.1

Basepair signature

cWW-L-R-L-cWW-L-R-R-cWW

Number of instances in this motif group

1

Unit IDs

3JCS|1|2|G|781
3JCS|1|2|G|782
3JCS|1|2|U|783
3JCS|1|2|U|784
3JCS|1|2|U|785
3JCS|1|2|A|786
3JCS|1|2|G|787
*
3JCS|1|2|C|806
3JCS|1|2|A|807
3JCS|1|2|C|808
3JCS|1|2|C|809
3JCS|1|2|G|810
3JCS|1|2|U|811

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain G

ribosomal protein L8e