IL_3JCS_097

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAG*CGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01903.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

28

Unit IDs

3JCS|1|2|C|1094
3JCS|1|2|A|1095
3JCS|1|2|G|1096
*
3JCS|1|2|C|1114
3JCS|1|2|G|1115
3JCS|1|2|U|1116
3JCS|1|2|A|1117
3JCS|1|2|G|1118

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 8

5S ribosomal RNA; 5S rRNA

Chain D

ribosomal protein L5

Chain O

ribosomal protein L18

Chain S

ribosomal protein L21e