IL_3JCS_099

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUU*A(OMG)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCS_099 not in the Motif Atlas

Geometric match to IL_6IA2_005

Geometric discrepancy: 0.1224

The information below is about IL_6IA2_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3JCS|1|2|U|1194
3JCS|1|2|U|1195
3JCS|1|2|U|1196
*
3JCS|1|2|A|1229
3JCS|1|2|OMG|1230
3JCS|1|2|A|1231

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain L

ribosomal protein L15

Chain P

ribosomal protein L18e

Chain n

ribosomal protein L44e