IL_3JCS_108

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GA(OMC)C*GGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCS_108 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2097

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

3JCS|1|2|G|1396
3JCS|1|2|A|1397
3JCS|1|2|OMC|1398
3JCS|1|2|C|1399
*
3JCS|1|2|G|1411
3JCS|1|2|G|1412
3JCS|1|2|U|1413
3JCS|1|2|U|1414

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain A

ribosomal protein L2

Chain N

ribosomal protein L16