IL_3JCS_114

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUUUUACUUC*GUUCGGG

Length

17 nucleotides

Bulged bases

3JCS|1|3|C|109

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50717.1

Basepair signature

cWW-cWW-L-R-R-R-L-L-L-L-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3JCS|1|3|U|103
3JCS|1|3|U|104
3JCS|1|3|U|105
3JCS|1|3|U|106
3JCS|1|3|U|107
3JCS|1|3|A|108
3JCS|1|3|C|109
3JCS|1|3|U|110
3JCS|1|3|U|111
3JCS|1|3|C|112
*
3JCS|1|3|G|120
3JCS|1|3|U|121
3JCS|1|3|U|122
3JCS|1|3|C|128
3JCS|1|3|G|129
3JCS|1|3|G|130
3JCS|1|3|G|131

Current chains

Chain 3

26S gamma ribosomal RNA

Nearby chains

Chain Q

ribosomal protein L19e

Chain Y

ribosomal protein L27e

Chain d

ribosomal protein L30e

Chain h

ribosomal protein L34e

Chain m

ribosomal protein L43e