IL_3JCS_116

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGAG*CAAGACC

Length

12 nucleotides

Bulged bases

3JCS|1|4|G|170, 3JCS|1|4|C|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCS|1|4|G|31
3JCS|1|4|U|32
3JCS|1|4|G|33
3JCS|1|4|A|34
3JCS|1|4|G|35
*
3JCS|1|4|C|167
3JCS|1|4|A|168
3JCS|1|4|A|169
3JCS|1|4|G|170
3JCS|1|4|A|171
3JCS|1|4|C|172
3JCS|1|4|C|173

Current chains

Chain 4

26S delta ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain B

ribosomal protein L3

Chain H

ribosomal protein L13