IL_3JCS_118
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UAG*CCA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_118 not in the Motif Atlas
- Geometric match to IL_6OL3_002
- Geometric discrepancy: 0.1736
- The information below is about IL_6OL3_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
3JCS|1|4|U|79
3JCS|1|4|A|80
3JCS|1|4|G|81
*
3JCS|1|4|C|117
3JCS|1|4|C|118
3JCS|1|4|A|119
Current chains
- Chain 4
- 26S delta ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain 5
- 26S epsilon ribosomal RNA
- Chain B
- ribosomal protein L3
- Chain J
- ribosomal protein L14
- Chain X
- ribosomal protein L24e
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