IL_3JCS_129
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCGAACU(OMU)*AUUAC(OMU)CAG
- Length
- 17 nucleotides
- Bulged bases
- 3JCS|1|1|C|47
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_129 not in the Motif Atlas
- Homologous match to IL_8P9A_234
- Geometric discrepancy: 0.0897
- The information below is about IL_8P9A_234
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- tSH-tHW-tHH-tHS
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
3JCS|1|1|C|29
3JCS|1|1|C|30
3JCS|1|1|G|31
3JCS|1|1|A|32
3JCS|1|1|A|33
3JCS|1|1|C|34
3JCS|1|1|U|35
3JCS|1|1|OMU|36
*
3JCS|1|1|A|43
3JCS|1|1|U|44
3JCS|1|1|U|45
3JCS|1|1|A|46
3JCS|1|1|C|47
3JCS|1|1|OMU|48
3JCS|1|1|C|49
3JCS|1|1|A|50
3JCS|1|1|G|51
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- ribosomal protein L13e
- Chain L
- ribosomal protein L15
- Chain M
- ribosomal protein L15e
- Chain j
- ribosomal protein L37e
- Chain n
- ribosomal protein L44e
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