IL_3JCS_130
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAAU*AGUUGUG
- Length
- 12 nucleotides
- Bulged bases
- 3JCS|1|1|U|146
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_130 not in the Motif Atlas
- Geometric match to IL_4V9F_108
- Geometric discrepancy: 0.3985
- The information below is about IL_4V9F_108
- Detailed Annotation
- Kink-turn with embedded cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_33886.1
- Basepair signature
- cWW-L-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JCS|1|1|C|119
3JCS|1|1|G|120
3JCS|1|1|A|121
3JCS|1|1|A|122
3JCS|1|1|U|123
*
3JCS|1|1|A|143
3JCS|1|1|G|144
3JCS|1|1|U|145
3JCS|1|1|U|146
3JCS|1|1|G|147
3JCS|1|1|U|148
3JCS|1|1|G|149
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- ribosomal protein L8e
- Chain M
- ribosomal protein L15e
- Chain a
- ribosomal protein L29
Coloring options: