IL_3JCS_138
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- ACUUAU*AAU
- Length
- 9 nucleotides
- Bulged bases
- 3JCS|1|1|C|1238, 3JCS|1|1|U|1239, 3JCS|1|1|A|1241
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_138 not in the Motif Atlas
- Geometric match to IL_4JGN_004
- Geometric discrepancy: 0.2499
- The information below is about IL_4JGN_004
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 259
Unit IDs
3JCS|1|1|A|1237
3JCS|1|1|C|1238
3JCS|1|1|U|1239
3JCS|1|1|U|1240
3JCS|1|1|A|1241
3JCS|1|1|U|1242
*
3JCS|1|1|A|1385
3JCS|1|1|A|1386
3JCS|1|1|U|1387
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain H
- ribosomal protein L13
- Chain K
- ribosomal protein L14e
- Chain R
- ribosomal protein L20e
- Chain c
- ribosomal protein L30
- Chain g
- ribosomal protein L33e
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