IL_3JCS_144
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAAGUCGG*CUGU(OMC)
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_144 not in the Motif Atlas
- Homologous match to IL_8C3A_484
- Geometric discrepancy: 0.08
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
3JCS|1|2|G|82
3JCS|1|2|G|83
3JCS|1|2|A|84
3JCS|1|2|A|85
3JCS|1|2|G|86
3JCS|1|2|U|87
3JCS|1|2|C|88
3JCS|1|2|G|89
3JCS|1|2|G|90
*
3JCS|1|2|C|579
3JCS|1|2|U|580
3JCS|1|2|G|581
3JCS|1|2|U|582
3JCS|1|2|OMC|583
Current chains
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 4
- Large subunit ribosomal RNA; LSU rRNA
- Chain B
- ribosomal protein L3
- Chain J
- ribosomal protein L14
Coloring options: