IL_3JCS_146

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCS_146 not in the Motif Atlas

Geometric match to IL_7Y2B_002

Geometric discrepancy: 0.2476

The information below is about IL_7Y2B_002

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_42997.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

3JCS|1|2|A|408
3JCS|1|2|U|409
3JCS|1|2|C|410
*
3JCS|1|2|G|416
3JCS|1|2|G|417
3JCS|1|2|U|418

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain A

ribosomal protein L2

Chain M

ribosomal protein L15e