IL_3JCS_159

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAGU*AUAAAC

Length

10 nucleotides

Bulged bases

3JCS|1|1|A|275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCS|1|1|G|179
3JCS|1|1|A|180
3JCS|1|1|G|181
3JCS|1|1|U|182
*
3JCS|1|1|A|271
3JCS|1|1|U|272
3JCS|1|1|A|273
3JCS|1|1|A|274
3JCS|1|1|A|275
3JCS|1|1|C|276

Current chains

Chain 1

26S alpha ribosomal RNA

Nearby chains

Chain 7

5.8S ribosomal RNA; 5.8S rRNA

Chain I

ribosomal protein L13e

Chain j

ribosomal protein L37e