IL_3JCS_161

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUAUC*GCAACGAA

Length

13 nucleotides

Bulged bases

3JCS|1|1|C|539, 3JCS|1|1|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCS|1|1|U|509
3JCS|1|1|U|510
3JCS|1|1|A|511
3JCS|1|1|U|512
3JCS|1|1|C|513
*
3JCS|1|1|G|538
3JCS|1|1|C|539
3JCS|1|1|A|540
3JCS|1|1|A|541
3JCS|1|1|C|542
3JCS|1|1|G|543
3JCS|1|1|A|544
3JCS|1|1|A|545

Current chains

Chain 1

26S alpha ribosomal RNA

Nearby chains

Chain K

ribosomal protein L14e

Chain R

ribosomal protein L20e

Chain c

ribosomal protein L30