IL_3JCS_165

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUCUCG*CAGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCS|1|4|U|131
3JCS|1|4|U|132
3JCS|1|4|C|133
3JCS|1|4|U|134
3JCS|1|4|C|135
3JCS|1|4|G|136
*
3JCS|1|4|C|154
3JCS|1|4|A|155
3JCS|1|4|G|156
3JCS|1|4|A|157
3JCS|1|4|A|158
3JCS|1|4|G|159

Current chains

Chain 4

26S delta ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain E

ribosomal protein L6

Chain H

ribosomal protein L13