IL_3JCT_077

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCT_077 not in the Motif Atlas

Geometric match to IL_5TBW_088

Geometric discrepancy: 0.2418

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

3JCT|1|1|U|2211
3JCT|1|1|C|2212
3JCT|1|1|A|2213
3JCT|1|1|A|2214
3JCT|1|1|A|2215
3JCT|1|1|G|2216
3JCT|1|1|U|2217
*
3JCT|1|1|A|2228
3JCT|1|1|A|2229
3JCT|1|1|C|2230
3JCT|1|1|C|2231
3JCT|1|1|A|2232
3JCT|1|1|A|2233
3JCT|1|1|G|2234

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain i

60S ribosomal protein L36-A