IL_3JCT_113
3D structure
- PDB id
- 3JCT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-em structure of eukaryotic pre-60S ribosomal subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCT_113 not in the Motif Atlas
- Homologous match to IL_8C3A_141
- Geometric discrepancy: 0.2207
- The information below is about IL_8C3A_141
- Detailed Annotation
- Double sheared; A in syn
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
3JCT|1|1|A|3342
3JCT|1|1|G|3343
3JCT|1|1|A|3344
3JCT|1|1|G|3345
*
3JCT|1|1|C|3360
3JCT|1|1|G|3361
3JCT|1|1|A|3362
3JCT|1|1|U|3363
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain u
- Ribosome biogenesis protein RLP24
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