IL_3JCT_141
3D structure
- PDB id
- 3JCT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-em structure of eukaryotic pre-60S ribosomal subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCT_141 not in the Motif Atlas
- Homologous match to IL_8P9A_244
- Geometric discrepancy: 0.0718
- The information below is about IL_8P9A_244
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
3JCT|1|1|G|404
3JCT|1|1|U|405
3JCT|1|1|G|406
3JCT|1|1|A|407
3JCT|1|1|A|408
3JCT|1|1|A|409
3JCT|1|1|U|410
*
3JCT|1|2|A|13
3JCT|1|2|C|14
3JCT|1|2|G|15
3JCT|1|2|G|16
3JCT|1|2|A|17
3JCT|1|2|U|18
3JCT|1|2|C|19
Current chains
- Chain 1
- RDN25-1 rRNA
- Chain 2
- RDN58-1 rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain e
- 60S ribosomal protein L32
Coloring options: