Motif IL_22311.1 Version IL_22311.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_001 | 7A0S | 0.0973 | 0 | Triple sheared with non-canonical cWW | X | LSU rRNA | C | 520 | U | 521 | G | 522 | A | 523 | A | 524 | A | 525 | C | 526 | * | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | cWW | cwW | ntSH | tHS | tHS | ntHS | cWW |
| 2 | IL_4WF9_001 | 4WF9 | 0.0657 | 0 | Triple sheared with non-canonical cWW | X | LSU rRNA | C | 555 | U | 556 | G | 557 | A | 558 | A | 559 | A | 560 | C | 561 | * | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | cWW | cwW | tSH | tHS | tHS | ntHS | cWW |
| 3 | IL_8B0X_065 | 8B0X | 0.0558 | 0 | a | LSU rRNA | C | 510 | U | 511 | G | 512 | A | 513 | A | 514 | A | 515 | C | 516 | * | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | cWW | cwW | tSH | tHS | tHS | cWW | ||
| 4 | IL_9E6Q_001 | 9E6Q | 0.0524 | 0 | Triple sheared with non-canonical cWW (H) | 1 | LSU rRNA | C | 539 | U | 540 | G | 541 | A | 542 | A | 543 | A | 544 | C | 545 | * | G | 17 | U | 18 | G | 19 | G | 20 | A | 21 | U | 22 | G | 23 | cWW | cwW | ntSH | tHS | tHS | cWW | |
| 5 | IL_9AXU_015 | 9AXU | 0.0373 | 0 | 2+4 | LSU rRNA + 5.8S rRNA | G | 412 | U | 413 | G | 414 | A | 415 | A | 416 | A | 417 | U | 418 | * | A | 21 | C | 22 | G | 23 | G | 24 | A | 25 | U | 26 | C | 27 | cWW | cwW | tSH | tHS | tHS | ntHS | cWW | |
| 6 | IL_8GLP_021 | 8GLP | 0.0000 | 0 | Triple sheared with non-canonical cWW (H) | L5+L8 | LSU rRNA + 5.8S rRNA | G | 415 | U | 416 | G | 417 | A | 418 | A | 419 | A | 420 | C | 421 | * | G | 13 | OMU | 14 | G | 15 | G | 16 | A | 17 | U | 18 | C | 19 | cWW | cwW | tSH | tHS | tHS | ntHS | cWW |
| 7 | IL_8P9A_244 | 8P9A | 0.0459 | 0 | Triple sheared with non-canonical cWW (H) | AR+AT | LSU rRNA + 5.8S rRNA | G | 404 | U | 405 | G | 406 | A | 407 | A | 408 | A | 409 | U | 410 | * | A | 13 | C | 14 | G | 15 | G | 16 | A | 17 | U | 18 | C | 19 | cWW | cwW | ntSH | tHS | tHS | ntHS | cWW |
| 8 | IL_8OI5_016 | 8OI5 | 0.0593 | 0 | Triple sheared with non-canonical cWW (H) | 1+4 | LSU rRNA + 5.8S rRNA | G | 404 | U | 405 | G | 406 | A | 407 | A | 408 | A | 409 | U | 410 | * | A | 13 | C | 14 | G | 15 | G | 16 | A | 17 | U | 18 | C | 19 | cWW | cwW | tSH | tHS | tHS | ntHS | cWW |
| 9 | IL_9DFE_001 | 9DFE | 0.0839 | 0 | Triple sheared with non-canonical cWW (H) | 1A | LSU rRNA | C | 510 | U | 511 | G | 512 | A | 513 | A | 514 | A | 515 | C | 516 | * | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | cWW | cwW | tSH | tHS | tHS | ntHS | cWW |
| 10 | IL_4V9F_001 | 4V9F | 0.0890 | 0 | Triple sheared with non-canonical cWW | 0 | LSU rRNA | A | 516 | U | 517 | G | 518 | A | 519 | A | 520 | A | 521 | U | 522 | * | G | 21 | U | 22 | G | 23 | G | 24 | A | 25 | U | 26 | U | 27 | cWW | cwW | tSH | tHS | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAAAC*GUGGAUG | 5 |
| GUGAAAU*ACGGAUC | 3 |
| GUGAAAC*GGGAUC | 1 |
| AUGAAAU*GUGGAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAAA*UGGAU | 6 |
| UGAAA*CGGAU | 3 |
| UGAAA*(OMU)GGAU | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Triple sheared with non-canonical cWW (H) (5)
- Triple sheared with non-canonical cWW (3)
- (2)
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Heat map statistics
- Min 0.04 | Avg 0.07 | Max 0.13
Coloring options: