IL_3JD5_002

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UUAAC*GCUAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JD5_002 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2944

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

3JD5|1|A|U|26
3JD5|1|A|U|27
3JD5|1|A|A|28
3JD5|1|A|A|29
3JD5|1|A|C|30
*
3JD5|1|A|G|269
3JD5|1|A|C|270
3JD5|1|A|U|271
3JD5|1|A|A|272
3JD5|1|A|A|273

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain L

28S ribosomal protein S12, mitochondrial

Chain p

28S ribosomal protein S18b, mitochondrial