IL_3JD5_005

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JD5_005 not in the Motif Atlas

Geometric match to IL_7A0S_028

Geometric discrepancy: 0.3718

The information below is about IL_7A0S_028

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

3JD5|1|A|C|77
3JD5|1|A|C|78
*
3JD5|1|A|G|102
3JD5|1|A|A|103
3JD5|1|A|G|104

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain Q

28S ribosomal protein S17, mitochondrial

Chain c

28S ribosomal protein S25, mitochondrial

Chain j

28S ribosomal protein S34, mitochondrial