IL_3JD5_014
3D structure
- PDB id
- 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- GUACUACUA*UUAAAAC
- Length
- 16 nucleotides
- Bulged bases
- 3JD5|1|A|C|489
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JD5_014 not in the Motif Atlas
- Homologous match to IL_6CZR_146
- Geometric discrepancy: 0.5358
- The information below is about IL_6CZR_146
- Detailed Annotation
- 9x7 Sarcin-Ricin with inserted C; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_68633.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
3JD5|1|A|G|486
3JD5|1|A|U|487
3JD5|1|A|A|488
3JD5|1|A|C|489
3JD5|1|A|U|490
3JD5|1|A|A|491
3JD5|1|A|C|492
3JD5|1|A|U|493
3JD5|1|A|A|494
*
3JD5|1|A|U|503
3JD5|1|A|U|504
3JD5|1|A|A|505
3JD5|1|A|A|506
3JD5|1|A|A|507
3JD5|1|A|A|508
3JD5|1|A|C|509
Current chains
- Chain A
- 28S ribosomal RNA, mitochondial
Nearby chains
- Chain L
- 28S ribosomal protein S12, mitochondrial
- Chain O
- 28S ribosomal protein S15, mitochondrial
- Chain n
- Aurora kinase A interacting protein 1
Coloring options: