IL_3JD5_021
3D structure
- PDB id
- 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- CAUC*GUUAG
- Length
- 9 nucleotides
- Bulged bases
- 3JD5|1|A|A|676
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JD5_021 not in the Motif Atlas
- Geometric match to IL_4K27_002
- Geometric discrepancy: 0.3854
- The information below is about IL_4K27_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
3JD5|1|A|C|615
3JD5|1|A|A|616
3JD5|1|A|U|617
3JD5|1|A|C|618
*
3JD5|1|A|G|673
3JD5|1|A|U|674
3JD5|1|A|U|675
3JD5|1|A|A|676
3JD5|1|A|G|677
Current chains
- Chain A
- 28S ribosomal RNA, mitochondial
Nearby chains
- Chain C
- 28S ribosomal protein S24, mitochondrial
- Chain E
- 28S ribosomal protein S5, mitochondrial
- Chain I
- 28S ribosomal protein S9, mitochondrial
- Chain J
- 28S ribosomal protein S10, mitochondrial
- Chain N
- 28S ribosomal protein S14, mitochondrial
Coloring options: