IL_3JD5_024
3D structure
- PDB id
- 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- CC*GAAAAAAAG
- Length
- 11 nucleotides
- Bulged bases
- 3JD5|1|A|A|639, 3JD5|1|A|A|642
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JD5_024 not in the Motif Atlas
- Geometric match to IL_1U9S_003
- Geometric discrepancy: 0.2622
- The information below is about IL_1U9S_003
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_71421.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
3JD5|1|A|C|628
3JD5|1|A|C|629
*
3JD5|1|A|G|638
3JD5|1|A|A|639
3JD5|1|A|A|640
3JD5|1|A|A|641
3JD5|1|A|A|642
3JD5|1|A|A|643
3JD5|1|A|A|644
3JD5|1|A|A|645
3JD5|1|A|G|646
Current chains
- Chain A
- 28S ribosomal RNA, mitochondial
Nearby chains
- Chain B
- 28S ribosomal protein S2, mitochondrial
- Chain E
- 28S ribosomal protein S5, mitochondrial
- Chain F
- 28S ribosomal protein S6, mitochondrial
- Chain I
- 28S ribosomal protein S9, mitochondrial
- Chain U
- 28S ribosomal protein S21, mitochondrial
- Chain b
- 28S ribosomal protein S23, mitochondrial
- Chain f
- 28S ribosomal protein S28, mitochondrial
- Chain m
- Coiled-coil-helix-coiled-coil-helix domain containing 1
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