IL_3JD5_025

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UAAG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JD5_025 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3906

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

3JD5|1|A|U|791
3JD5|1|A|A|792
3JD5|1|A|A|793
3JD5|1|A|G|794
*
3JD5|1|A|C|804
3JD5|1|A|U|805
3JD5|1|A|U|806
3JD5|1|A|A|807

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain I

28S ribosomal protein S9, mitochondrial

Chain J

28S ribosomal protein S10, mitochondrial

Chain N

28S ribosomal protein S14, mitochondrial