IL_3JD5_027

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JD5_027 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.3318

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3JD5|1|A|G|839
3JD5|1|A|C|840
3JD5|1|A|C|841
3JD5|1|A|C|842
*
3JD5|1|A|G|916
3JD5|1|A|U|917
3JD5|1|A|A|918
3JD5|1|A|A|919
3JD5|1|A|C|920

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain n

Aurora kinase A interacting protein 1