IL_3JD5_031
3D structure
- PDB id
- 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- UUAAAG*CCGACG
- Length
- 12 nucleotides
- Bulged bases
- 3JD5|1|A|C|394
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JD5_031 not in the Motif Atlas
- Geometric match to IL_9AXU_113
- Geometric discrepancy: 0.3257
- The information below is about IL_9AXU_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74322.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
3JD5|1|A|U|296
3JD5|1|A|U|297
3JD5|1|A|A|298
3JD5|1|A|A|299
3JD5|1|A|A|300
3JD5|1|A|G|301
*
3JD5|1|A|C|390
3JD5|1|A|C|391
3JD5|1|A|G|392
3JD5|1|A|A|393
3JD5|1|A|C|394
3JD5|1|A|G|395
Current chains
- Chain A
- 28S ribosomal RNA, mitochondial
Nearby chains
- Chain L
- 28S ribosomal protein S12, mitochondrial
- Chain O
- 28S ribosomal protein S15, mitochondrial
- Chain Q
- 28S ribosomal protein S17, mitochondrial
- Chain c
- 28S ribosomal protein S25, mitochondrial
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