IL_3JD5_035

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GGC*GCAC

Length

7 nucleotides

Bulged bases

3JD5|1|A|A|832

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JD5_035 not in the Motif Atlas

Geometric match to IL_7ZLQ_001

Geometric discrepancy: 0.2364

The information below is about IL_7ZLQ_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

3JD5|1|A|G|521
3JD5|1|A|G|522
3JD5|1|A|C|523
*
3JD5|1|A|G|830
3JD5|1|A|C|831
3JD5|1|A|A|832
3JD5|1|A|C|833

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain E

28S ribosomal protein S5, mitochondrial

Chain m

Coiled-coil-helix-coiled-coil-helix domain containing 1

Chain n

Aurora kinase A interacting protein 1