Motif IL_10289.2 Version IL_10289.2 of this group appears in releases 3.94 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6	1-5	1-6	2-5	3-4	3-5
1	IL_8P9A_471	8P9A	0.6057	2	Isolated non-canonical cWW pair	sR	SSU rRNA	U	1369	U	1372	C	1373	*	G	1352	U	1353	G	1354		ncWW	cWw	cWW
2	IL_8P9A_415	8P9A	0.4388	1	Isolated non-canonical cWW pair	sR	SSU rRNA	G	819	U	821	U	822	*	A	850	U	851	C	852		cWW	cWw	cWW
3	IL_4WF9_018	4WF9	0.3800	0	Isolated non-canonical cWW pair	X	LSU rRNA	U	705	U	706	G	707	*	U	638	U	639	G	640		cWW		cWW
4	IL_4KYY_002	4KYY	0.3691	0	Isolated non-canonical cWW pair	B+A	RNA 17-mer	U	8	U	9	G	10	*	U	8	U	9	G	10		cWW		cWW
5	IL_8C3A_468	8C3A	0.3500	0	Isolated non-canonical cWW pair	CM	SSU rRNA	U	1483	U	1484	G	1485	*	C	1496	U	1497	G	1498		cWW		cWW
6	IL_7A0S_107	7A0S	0.3523	0	Isolated non-canonical cWW pair	Y	5S rRNA	U	82	C	83	G	84	*	C	97	C	98	G	99		cWW	ncBW	cWW
7	IL_8C3A_477	8C3A	0.3104	0	Isolated non-canonical cWW pair	CM	SSU rRNA	U	1652	U	1653	A	1654	*	U	1721	U	1722	G	1723		ncWW	ncWw	cWW
8	IL_8P9A_459	8P9A	0.3245	0	Isolated non-canonical cWW pair	sR	SSU rRNA	U	1665	U	1666	A	1667	*	U	1734	U	1735	G	1736		cWW		cWW
9	IL_5D0B_001	5D0B	0.2384	0	Isolated non-canonical cWW pair	F	RNA (17-mer)	A	37	A	38	U	39	*	A	31	C	32	U	33		cWW	cWW	cWW
10	IL_7A0S_026	7A0S	0.2238	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	864	A	865	U	866	*	A	936	C	937	G	938		cWW	cWW	cWW
11	IL_8P9A_330	8P9A	0.2844	0	Isolated non-canonical cWW pair	AR	LSU rRNA	G	2824	C	2825	U	2826	*	G	2863	A	2864	U	2865		cWW	cWWa	cWW
12	IL_8P9A_272	8P9A	0.2978	0	Isolated non-canonical cWW pair	AR	LSU rRNA	G	1087	U	1088	G	1089	*	C	1069	U	1070	U	1071		cWW	ncWw	cWW
13	IL_7ECP_001	7ECP	0.2211	0	Isolated non-canonical cWW pair	B+A	RNA (12-mer)	G	8	U	9	C	10	*	G	3	C	4	C	5		cWW	cWW	cWW
14	IL_7ECP_002	7ECP	0.2854	0	Isolated non-canonical cWW pair	B+A	RNA (12-mer)	G	3	C	4	C	5	*	G	8	U	9	C	10		cWW	cWW	cWW
15	IL_4V9F_017	4V9F	0.2384	0	Isolated non-canonical cWW pair	0	LSU rRNA	C	558	U	559	U	560	*	A	597	C	598	G	599		cWW	cWW	cWW
16	IL_8P9A_237	8P9A	0.2629	0	Isolated non-canonical cWW pair	AR	LSU rRNA	C	125	U	126	G	127	*	C	141	C	142	G	143		cWW	cWW	cWW
17	IL_3RW6_004	3RW6	0.3025	0	Isolated non-canonical cWW pair	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	C	33	U	34	G	35	*	C	24	C	25	G	26		cWW	cWW	cWW
18	IL_6CZR_171	6CZR	0.3531	0	Isolated non-canonical cWW pair	1a	SSU rRNA	G	1442	C	1443	C	1444	*	G	1418	U	1419	C	1420		cWW	ncWW	cWW
19	IL_4LFB_063	4LFB	0.2878	0	Isolated non-canonical cWW pair	A	SSU rRNA	G	1464	C	1465	C	1466	*	G	1435	U	1436	C	1437		cWW	cWW	cWW
20	IL_4LFB_010	4LFB	0.2565	0	Isolated non-canonical cWW pair	A	SSU rRNA	C	186	C	187	C	188	*	G	190\|\|\|K	U	190\|\|\|L	G	191		cWW	cWW	cWW
21	IL_8P9A_274	8P9A	0.3176	0	Isolated non-canonical cWW pair	AR	LSU rRNA	A	1120	U	1121	U	1122	*	A	1136	C	1137	U	1138		cWW	cWW	cWW
22	IL_7A0S_020	7A0S	0.2274	0	Isolated non-canonical cWW pair	X	LSU rRNA	G	767	U	768	C	769	*	G	754	C	755	C	756		cWW	cWW	cWW
23	IL_8P9A_249	8P9A	0.2376	0	Isolated non-canonical cWW pair	AR	LSU rRNA	G	792	C	793	U	794	*	G	668	U	669	C	670		cWW	cWW	cWW
24	IL_9DFE_015	9DFE	0.2215	0	Isolated non-canonical cWW pair	1A	LSU rRNA	C	806	U	807	G	808	*	C	672	C	673	G	674		cWW	cWW	cWW
25	IL_5J7L_259	5J7L	0.2303	0	Isolated non-canonical cWW pair	DA	LSU rRNA	C	806	U	807	G	808	*	C	672	C	673	G	674		cWW	cWW	cWW
26	IL_4WF9_020	4WF9	0.2129	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	851	U	852	G	853	*	C	717	C	718	G	719		cWW	cWW	cWW
27	IL_7A0S_014	7A0S	0.2107	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	819	U	820	A	821	*	U	685	C	686	G	687		cWW	cWW	cWW
28	IL_8P9A_255	8P9A	0.2574	0	Isolated non-canonical cWW pair	AR	LSU rRNA	C	938	U	939	G	940	*	C	803	C	804	G	805		cWW	cWW	cWW
29	IL_4WF9_083	4WF9	0.1922	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	2111	C	2112	U	2113	*	A	2260	A	2261	G	2262		cWW	ncWWa	cWW
30	IL_5J7L_363	5J7L	0.2348	0	Isolated non-canonical cWW pair	AA	SSU rRNA	G	1405	U	1406	5MC	1407	*	G	1494	U	1495	C	1496		cWW		cWW
31	IL_8C3A_472	8C3A	0.2269	0	Isolated non-canonical cWW pair	CM	SSU rRNA	G	1629	U	1630	C	1631	*	G	1744	U	1745	C	1746		cWW		cWW
32	IL_8P9A_454	8P9A	0.2658	0	Isolated non-canonical cWW pair	sR	SSU rRNA	G	1642	U	1643	C	1644	*	G	1757	U	1758	C	1759		cWW		cWW
33	IL_4V83_235	4V83	0.3216	0	Isolated non-canonical cWW pair	CV	domain 3 of PSIC IGR IRES RNA	G	6173	U	6174	G	6175	*	C	6153	U	6154	C	6155		cWW	ncwW	cWW
34	IL_7A0S_042	7A0S	0.3135	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	1252	C	1253	G	1254	*	C	1218	C	1219	G	1220		cWW	ncBW	cWW
35	IL_4V9F_023	4V9F	0.2538	0	Isolated non-canonical cWW pair	0	LSU rRNA	C	899	U	900	G	901	*	C	763	C	764	G	765		cWW	cWW	cWW
36	IL_8P9A_432	8P9A	0.2788	0	Isolated non-canonical cWW pair	sR	SSU rRNA	G	1464	C	1465	G	1466	*	C	1173	C	1174	U	1175		cWW	ncBW	cWW
37	IL_8C3A_450	8C3A	0.3161	0	Isolated non-canonical cWW pair	CM	SSU rRNA	G	1450	C	1451	G	1452	*	C	1158	C	1159	U	1160		cWW	ncBW	cWW
38	IL_4PDQ_001	4PDQ	0.2794	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44		cWW		cWW
39	IL_4LFB_069	4LFB	0.2503	0	Isolated non-canonical cWW pair	A	SSU rRNA	G	1405	U	1406	5MC	1407	*	G	1494	U	1495	C	1496		cWW	ncWw	cWW
40	IL_5Z1I_001	5Z1I	0.2704	0	Isolated non-canonical cWW pair	A	RNA (21-mer)	G	5	U	6	C	7	*	G	19\|\|\|\|8_555	U	20\|\|\|\|8_555	C	21\|\|\|\|8_555		cWW	cWw	cWW
41	IL_8P9A_374	8P9A	0.2755	0	Isolated non-canonical cWW pair	sR	SSU rRNA	A	471	U	472	A	473	*	U	35	C	36	U	37		cWW	cWW	cWW
42	IL_8C3A_393	8C3A	0.2042	0	Isolated non-canonical cWW pair	CM	SSU rRNA	A	469	U	470	A	471	*	U	35	C	36	U	37		cWW	cWW	cWW
43	IL_4ZC7_004	4ZC7	0.2330	0	Isolated non-canonical cWW pair	B+A	RNA duplex	G	28	U	29	C	30	*	G	19	U	20	C	21		cWW	ncwW	cWW
44	IL_4ZC7_001	4ZC7	0.2182	0	Isolated non-canonical cWW pair	A+B	RNA duplex	G	5	U	6	C	7	*	G	42	U	43	C	44		cWW	ncwW	cWW
45	IL_4WF9_017	4WF9	0.2807	0	Isolated non-canonical cWW pair	X	LSU rRNA	A	618	U	619	G	620	*	C	607	C	608	U	609		cWW	cWW	cWW
46	IL_5J7L_257	5J7L	0.3163	0	Isolated non-canonical cWW pair	DA	LSU rRNA	A	575	U	576	G	577	*	C	564	C	565	U	566		cWW	cWW	cWW
47	IL_9DFE_013	9DFE	0.3035	0	Isolated non-canonical cWW pair	1A	LSU rRNA	A	575	U	576	G	577	*	C	564	C	565	U	566		cWW	cWW	cWW
48	IL_7A0S_011	7A0S	0.3066	0	Isolated non-canonical cWW pair	X	LSU rRNA	A	584	U	585	G	586	*	C	573	C	574	U	575		cWW	cWW	cWW
49	IL_4Y1M_005	4Y1M	0.2442	0	Isolated non-canonical cWW pair	B	E. coli yybP-ykoY riboswitch	A	103	U	104	A	105	*	U	4	U	5	U	6		cWW	ncWw	cWW
50	IL_8P9A_245	8P9A	0.2318	0	Isolated non-canonical cWW pair	AR	LSU rRNA	U	429	U	430	U	431	*	A	628	U	629	A	630		cWW		cWW
51	IL_6CZR_157	6CZR	0.2675	0	Isolated non-canonical cWW pair	1a	SSU rRNA	G	1175	U	1176	C	1177	*	G	1044	U	1045	C	1046		cWW	ncWw	cWW
52	IL_4LFB_047	4LFB	0.2461	0	Isolated non-canonical cWW pair	A	SSU rRNA	G	1193	U	1194	C	1195	*	G	1061	U	1062	C	1063		cWW	cWw	cWW
53	IL_5J7L_050	5J7L	0.2803	0	Isolated non-canonical cWW pair	AA	SSU rRNA	G	1193	U	1194	C	1195	*	G	1061	U	1062	C	1063		cWW	cWw	cWW
54	IL_6E7L_001	6E7L	0.2304	0	Isolated non-canonical cWW pair	A	RNA (22-mer)	C	17\|\|\|\|7_375	U	18\|\|\|\|7_375	G	19\|\|\|\|7_375	*	C	4	U	5	G	6	ncWW	cWW	cWw	cWW
55	IL_5MWI_001	5MWI	0.2511	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	2	U	3	G	4	*	C	23\|\|\|\|4_555	U	24\|\|\|\|4_555	G	25\|\|\|\|4_555		cWW	cWw	cWW
56	IL_3LOA_002	3LOA	0.2531	0	Isolated non-canonical cWW pair	A+B	RNA (21-mer) + RNA (23-mer)	G	1405	5BU	1406	C	1407	*	G	1494	U	1495	C	1496		cWW	cWw	cWW
57	IL_5VCI_001	5VCI	0.3224	0	Isolated non-canonical cWW pair	A+B	RNA (22-mer) + RNA (12-mer)	C	1	U	2	G	3	*	C	10	U	11	G	12		cWW	cWw	cWW
58	IL_4PCJ_001	4PCJ	0.3153	0	Isolated non-canonical cWW pair	A	trCUG-3('5)	C	1	U	2	G	3	*	C	33	U	34	G	35		cWW	cWw	cWW
59	IL_4KZD_003	4KZD	0.2699	0	Isolated non-canonical cWW pair	R	RNA (84-MER)	C	66	U	67	C	68	*	G	17	U	18	G	19		cWW	cWw	cWW
60	IL_7MDL_001	7MDL	0.3369	0	Isolated non-canonical cWW pair	E	RNA (90-MER)	C	66\|\|A	U	67\|\|A	U	67\|\|A\|A	*	A	5\|\|A\|B	U	6\|\|A	G	7\|\|A		cWW	cWw	cWW
61	IL_8G9Z_001	8G9Z	0.3527	0	Isolated non-canonical cWW pair	E	Selenocysteine transfer RNA	C	66\|\|A	U	67\|\|A	U	67\|\|A\|A	*	A	5\|\|A\|B	U	6\|\|A	G	7\|\|A		cWW	cWw	cWW
62	IL_3RG5_002	3RG5	0.2785	0	Isolated non-canonical cWW pair	B	Selenocysteine transfer RNA	C	66	U	67	U	67\|\|\|A	*	A	5\|\|\|B	U	6	G	7		cWW	cWw	cWW
63	IL_1MZP_001	1MZP	0.2985	0	Isolated non-canonical cWW pair	B	fragment of 23S rRNA	C	50	U	51	U	52	*	A	4	U	5	G	6		cWW	cWw	cWW
64	IL_7A0S_078	7A0S	0.2825	0	Isolated non-canonical cWW pair	X	LSU rRNA	U	2211	U	2212	G	2213	*	C	2068	U	2069	G	2070		cWW	cWw	cWW
65	IL_5J7L_326	5J7L	0.2695	0	Isolated non-canonical cWW pair	DA	LSU rRNA	U	2085	U	2086	G	2087	*	C	2232	U	2233	G	2234		cWW	cWw	cWW
66	IL_9DFE_083	9DFE	0.2989	0	Isolated non-canonical cWW pair	1A	LSU rRNA	U	2232	U	2233	G	2234	*	C	2085	U	2086	G	2087		cWW	cWw	cWW
67	IL_8C3A_431	8C3A	0.3013	0	Isolated non-canonical cWW pair	CM	SSU rRNA	U	733	U	734	U	735	*	A	783	U	784	G	785		cWW	cWw	cWW
68	IL_8P9A_413	8P9A	0.3023	0	Isolated non-canonical cWW pair	sR	SSU rRNA	U	748	U	749	U	750	*	A	799	U	800	G	801		cWW	cWw	cWW
69	IL_2O3X_004	2O3X	0.2884	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW	cWw	cWW
70	IL_6SX2_001	6SX2	0.2589	0	Isolated non-canonical cWW pair	C+D	RNA (19-mer)	U	9	U	10	A	11	*	U	9	U	10	A	11		cWW	ncWw	cWW
71	IL_8P9A_387	8P9A	0.3092	0	Isolated non-canonical cWW pair	sR	SSU rRNA	A	257	C	258	U	259	*	A	206	U	207	U	208		cWW	cWW	cWW
72	IL_8C3A_406	8C3A	0.2739	0	Isolated non-canonical cWW pair	CM	SSU rRNA	A	204	U	205	U	206	*	A	255	C	256	U	257		cWW	cWW	cWW
73	IL_2O3V_004	2O3V	0.2645	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW	cWw	cWW
74	IL_3BNT_001	3BNT	0.2963	0	Isolated non-canonical cWW pair	A	A site of human mitochondrial ribosome	G	18\|\|\|\|4_665	U	19\|\|\|\|4_665	C	20\|\|\|\|4_665	*	G	4	U	5	C	6		cWW	cWw	cWW
75	IL_7L0Z_001	7L0Z	0.2654	0	Isolated non-canonical cWW pair	G	RNA (69-MER)	C	58	U	59	C	60	*	G	10	U	11	G	12		cWW	cWw	cWW
76	IL_3BNR_007	3BNR	0.2348	0	Isolated non-canonical cWW pair	D+C	A site of human mitochondrial ribosome, chain three	G	17	U	18	C	19	*	G	5	U	6	C	7		cWW	cWw	cWW
77	IL_2ET8_004	2ET8	0.2679	0	Isolated non-canonical cWW pair	A+B	RNA (22-mer)	G	18	U	19	C	20	*	G	27	U	28	C	29		cWW	cWw	cWW
78	IL_4P3U_007	4P3U	0.1876	0	Isolated non-canonical cWW pair	C+D	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44		cWW	ncWw	cWW
79	IL_4P3T_001	4P3T	0.1830	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7		cWW	ncWw	cWW
80	IL_7XPL_001	7XPL	0.2006	0	Isolated non-canonical cWW pair	G+H	BMG3 RNA strand A + BMG3 RNA strand B	C	22	U	23	U	24	*	A	6	U	7	G	8		cWW	cWw	cWW
81	IL_2O3V_001	2O3V	0.2326	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7		cWW	cWw	cWW
82	IL_2OE8_001	2OE8	0.1560	0	Isolated non-canonical cWW pair	A+B	RNA (16-mer) + RNA (17-mer)	G	1405	U	1406	C	1407	*	G	1494	U	1495	C	1496		cWW	cWw	cWW
83	IL_2OE5_001	2OE5	0.1578	0	Isolated non-canonical cWW pair	A+B	RNA (16-mer) + RNA (17-mer)	G	1405	U	1406	C	1407	*	G	1494	U	1495	C	1496		cWW	cWw	cWW
84	IL_4P3T_006	4P3T	0.1497	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21		cWW	cWw	cWW
85	IL_4KYY_003	4KYY	0.1727	0	Isolated non-canonical cWW pair	B+A	RNA 17-mer	G	5	U	6	U	7	*	A	11	U	12	C	13		cWW	cWw	cWW
86	IL_2O3Y_001	2O3Y	0.1868	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7		cWW	cWw	cWW
87	IL_5ZTM_002	5ZTM	0.1859	0	Isolated non-canonical cWW pair	C	non-coding mRNA sequence roX2	G	157	U	158	U	159	*	A	123	U	124	C	125		cWW	cWw	cWW
88	IL_3U4M_001	3U4M	0.2080	0	Isolated non-canonical cWW pair	B	LSU rRNA	C	2179	U	2180	U	2181	*	A	2108	U	2109	G	2110		cWW	cWw	cWW
89	IL_4JGN_001	4JGN	0.1777	0	Isolated non-canonical cWW pair	E	RNA (20-mer)	C	505	U	506	G	507	*	C	517\|\|\|\|4_555	U	518\|\|\|\|4_555	G	519\|\|\|\|4_555		cWW	cWw	cWW
90	IL_4KYY_001	4KYY	0.1641	0	Isolated non-canonical cWW pair	A+B	RNA 17-mer	G	5	U	6	U	7	*	A	11	U	12	C	13		cWW	cWw	cWW
91	IL_4K31_004	4K31	0.1805	0	Isolated non-canonical cWW pair	B+C	RNA (23-mer)	G	19	U	20	C	21	*	G	5	U	6	C	7		cWW	cWw	cWW
92	IL_4K31_001	4K31	0.1877	0	Isolated non-canonical cWW pair	C+B	RNA (23-mer)	G	19	U	20	C	21	*	G	5	U	6	C	7		cWW	cWw	cWW
93	IL_3BNN_005	3BNN	0.2224	0	Isolated non-canonical cWW pair	D+C	A site of human ribosome	G	17	U	18	C	19	*	G	3	U	4	C	5		cWW	cWw	cWW
94	IL_3BNR_012	3BNR	0.2070	0	Isolated non-canonical cWW pair	D+C	A site of human mitochondrial ribosome, chain three	G	3	U	4	C	5	*	G	19	U	20	C	21		cWW	cWw	cWW
95	IL_2O3Y_004	2O3Y	0.1842	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW	cWw	cWW
96	IL_3BNN_008	3BNN	0.2145	0	Isolated non-canonical cWW pair	D+C	A site of human ribosome	G	3	U	4	C	5	*	G	17	U	18	C	19		cWW	cWw	cWW
97	IL_1MFQ_002	1MFQ	0.2266	0	Isolated non-canonical cWW pair	A	SRP RNA	G	120	U	121	U	122	*	A	228	U	229	C	230		cWW	cWw	cWW
98	IL_8P9A_343	8P9A	0.2315	0	Isolated non-canonical cWW pair	AR	LSU rRNA	A	3040	U	3041	U	3042	*	A	3012	U	3013	U	3014		cWW	cWw	cWW
99	IL_4TS2_004	4TS2	0.2701	0	Isolated non-canonical cWW pair	X+Y	Spinach aptamer RNA, bimolecular construct	G	20	U	21	G	22	*	C	77	U	78	C	79		cWW	cWw	cWW
100	IL_8P9A_262	8P9A	0.2536	0	Isolated non-canonical cWW pair	AR	LSU rRNA	U	954	U	955	U	956	*	A	965	U	966	A	967		cWW	cWw	cWW
101	IL_8P9A_350	8P9A	0.2027	0	Isolated non-canonical cWW pair	AR	LSU rRNA	U	3280	U	3281	U	3282	*	A	3168	U	3169	A	3170		cWW	cWw	cWW
102	IL_4KNQ_001	4KNQ	0.2521	0	Isolated non-canonical cWW pair	B	RNA (20-mer)	C	204	C	205	G	206	*	C	216\|\|\|\|4_555	C	217\|\|\|\|4_555	G	218\|\|\|\|4_555		cWW	cwW	cWW
103	IL_4V9F_047	4V9F	0.2295	0	Isolated non-canonical cWW pair	0	LSU rRNA	C	1303	U	1304	C	1305	*	G	1349	U	1350	G	1351		cWW	cWw	cWW
104	IL_5T3K_002	5T3K	0.2197	0	Isolated non-canonical cWW pair	B+A	RNA (16-mer)	G	24	75B	25	C	26	*	G	10	U	11	C	12		cWW	cWw	cWW
105	IL_1T0E_002	1T0E	0.2294	0	Isolated non-canonical cWW pair	C+A	RNA (17-mer)	G	14	U	15	C	16	*	G	10\|\|A	U	11	C	12		cWW	cWw	cWW
106	IL_4PDQ_004	4PDQ	0.2019	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21		cWW	ncWw	cWW
107	IL_8P9A_434	8P9A	0.2102	0	Isolated non-canonical cWW pair	sR	SSU rRNA	G	1213	U	1214	C	1215	*	G	1448	U	1449	U	1450		ncWW	ncWw	cWW
108	IL_4P3U_012	4P3U	0.2048	0	Isolated non-canonical cWW pair	D+C	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21		cWW	ncWw	cWW
109	IL_7Y2B_001	7Y2B	0.2102	0	Isolated non-canonical cWW pair	S	RNA (13-mer)	C	3	U	4	G	5	*	C	9\|\|\|\|5_555	U	10\|\|\|\|5_555	G	11\|\|\|\|5_555		cWW		cWW
110	IL_8P9A_340	8P9A	0.2012	0	Isolated non-canonical cWW pair	AR	LSU rRNA	G	2918	A	2919	U	2920	*	A	2926	C	2927	C	2928		cWW	cWW	cWW
111	IL_8FEQ_001	8FEQ	0.2171	0	Isolated non-canonical cWW pair	AAA	RNA 16mer with two separated s(2)U	U	11\|\|\|\|4_555	SUR	12\|\|\|\|4_555	C	13\|\|\|\|4_555	*	G	4	SUR	5	A	6		cWW	cWw	cWW
112	IL_1RPU_001	1RPU	0.2058	0	Isolated non-canonical cWW pair	D+C	RNA (21-mer)	U	9\|\|A	C	10\|\|A	A	11\|\|A	*	U	9\|\|A	C	10\|\|A	A	11\|\|A		cWW	ncBW	cWW
113	IL_1UN6_005	1UN6	0.1971	0	Isolated non-canonical cWW pair	F	5S RIBOSOMAL RNA	C	95	U	96	G	97	*	C	79	U	80	G	81		cWW	ncWw	cWW
114	IL_4E48_004	4E48	0.1823	0	Isolated non-canonical cWW pair	A+B	RNA (20-mer)	C	11	U	12	G	13	*	C	28	U	29	G	30		cWW	ncWw	cWW
115	IL_4E48_001	4E48	0.1869	0	Isolated non-canonical cWW pair	B+A	RNA (20-mer)	C	37	U	38	G	39	*	C	2	U	3	G	4		cWW		cWW
116	IL_4E48_002	4E48	0.1629	0	Isolated non-canonical cWW pair	A+B	RNA (20-mer)	C	5	U	6	G	7	*	C	34	U	35	G	36		cWW		cWW
117	IL_3GM7_003	3GM7	0.1633	0	Isolated non-canonical cWW pair	G+H	RNA (18-mer)	C	7	U	8	G	9	*	C	10	U	11	G	12		cWW	ncWw	cWW
118	IL_3GM7_006	3GM7	0.1232	0	Isolated non-canonical cWW pair	H+G	RNA (18-mer)	C	1	U	2	G	3	*	C	16	U	17	G	18		cWW	ncWw	cWW
119	IL_3SZX_001	3SZX	0.1653	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	C	13	U	14	G	15	*	C	7	U	8	G	9		cWW		cWW
120	IL_4E48_003	4E48	0.1388	0	Isolated non-canonical cWW pair	B+A	RNA (20-mer)	C	31	U	32	G	33	*	C	8	U	9	G	10		cWW		cWW
121	IL_5VCI_002	5VCI	0.1305	0	Isolated non-canonical cWW pair	A+B	RNA (22-mer) + RNA (12-mer)	C	4	U	5	G	6	*	C	7	U	8	G	9		cWW	ncWw	cWW
122	IL_5MWI_002	5MWI	0.1482	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	5	U	6	G	7	*	C	20\|\|\|\|4_555	U	21\|\|\|\|4_555	G	22\|\|\|\|4_555		cWW		cWW
123	IL_5MWI_004	5MWI	0.1629	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	11	U	12\|\|A	G	13	*	C	14\|\|\|\|4_555	U	15\|\|A\|\|4_555	G	16\|\|\|\|4_555		cWW		cWW
124	IL_3GM7_005	3GM7	0.1595	0	Isolated non-canonical cWW pair	H+G	RNA (18-mer)	C	4	U	5	G	6	*	C	13	U	14	G	15		cWW		cWW
125	IL_4E59_001	4E59	0.1347	0	Isolated non-canonical cWW pair	A+B	RNA duplex containing CCG repeats	C	2	C	3	G	4	*	C	2	C	3	G	4		cWW	ncBW	cWW
126	IL_3GM7_002	3GM7	0.1421	0	Isolated non-canonical cWW pair	H+G	RNA (18-mer)	C	13	U	14	G	15	*	C	4	U	5	G	6		cWW		cWW
127	IL_3GM7_004	3GM7	0.1934	0	Isolated non-canonical cWW pair	H+G	RNA (18-mer)	C	7	U	8	G	9	*	C	10	U	11	G	12		cWW	ncWw	cWW
128	IL_4E48_006	4E48	0.1917	0	Isolated non-canonical cWW pair	A+B	RNA (20-mer)	C	17	U	18	G	19	*	C	22	U	23	G	24		cWW	ncWw	cWW
129	IL_4KNQ_002	4KNQ	0.1826	0	Isolated non-canonical cWW pair	B	RNA (20-mer)	C	213\|\|\|\|4_555	C	214\|\|\|\|4_555	G	215\|\|\|\|4_555	*	C	207	C	208	G	209		cWW		cWW
130	IL_4JGN_002	4JGN	0.1186	0	Isolated non-canonical cWW pair	E	RNA (20-mer)	C	514\|\|\|\|4_555	U	515\|\|\|\|4_555	G	516\|\|\|\|4_555	*	C	508	U	509	G	510		cWW	ncWw	cWW
131	IL_4V9F_105	4V9F	0.1504	0	Isolated non-canonical cWW pair	9	5S rRNA	C	72	A	73	G	74	*	C	107	C	108	G	109		cWW	cWW	cWW
132	IL_6M6R_001	6M6R	0.1758	0	Isolated non-canonical cWW pair	B	RNA (8-mer)	G	2	C	3	C	4	*	G	5\|\|\|\|7_555	C	6\|\|\|\|7_555	C	7\|\|\|\|7_555		cWW		cWW
133	IL_5Y7M_007	5Y7M	0.1494	0	Isolated non-canonical cWW pair	D	RNA (52-MER)	G	37	A	38	U	39	*	A	11	C	12	C	13		cWW	cWW	cWW
134	IL_5AOX_001	5AOX	0.1728	0	Isolated non-canonical cWW pair	C	ALU JO CONSENSUS RNA	C	18	A	19	C	20	*	G	9	C	10	G	11		cWW	cWW	cWW
135	IL_1U9S_007	1U9S	0.1442	0	Isolated non-canonical cWW pair	A	RIBONUCLEASE P	C	191	A	192	C	193	*	G	177	C	178	G	179		cWW	cWW	cWW
136	IL_5Y85_006	5Y85	0.1122	0	Isolated non-canonical cWW pair	C+D	RNA (18-mer) + DNA/RNA (50-MER)	G	13	A	14	C	15	*	G	4	C	5	C	6		cWW	cWW	cWW
137	IL_1KFO_005	1KFO	0.1363	0	Isolated non-canonical cWW pair	A	RNA (19-mer)	G	1	A	2	A	3	*	5BU	16\|\|\|\|8_555	C	17\|\|\|\|8_555	C	18\|\|\|\|8_555		cWW	cWW	cWW
138	IL_3MEI_002	3MEI	0.1239	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	8	C	9	C	10	*	G	13	C	14	C	15		cWW	ncBW	cWW
139	IL_5CCB_001	5CCB	0.1254	0	Isolated non-canonical cWW pair	N	tRNA	A	37	A	38	U	39	*	A	31	C	32	U	33		cWW	cWW	cWW
140	IL_1Z7F_001	1Z7F	0.0929	0	Isolated non-canonical cWW pair	A	RNA (16-mer)	A	10\|\|\|\|6_765	A	11\|\|\|\|6_765	U	12\|\|\|\|6_765	*	A	5	C	6	U	7		cWW	cWW	cWW
141	IL_6OL3_002	6OL3	0.0000	0	Isolated non-canonical cWW pair	C	VA RNA	G	53	A	54	C	55	*	G	78	C	79	C	80		cWW	cWW	cWW
142	IL_8P9A_406	8P9A	0.0964	0	Isolated non-canonical cWW pair	sR	SSU rRNA	A	973	A	974	C	975	*	G	624	C	625	U	626		cWW	cWW	cWW
143	IL_8C3A_427	8C3A	0.0949	0	Isolated non-canonical cWW pair	CM	SSU rRNA	A	958	A	959	C	960	*	G	622	C	623	U	624		cWW	cWW	cWW
144	IL_4YHW_001	4YHW	0.1566	0	Isolated non-canonical cWW pair	E+C	U6 snRNA fragment	C	68	C	69	U	70	*	A	11	C	12	G	13		cWW		cWW
145	IL_4YHW_002	4YHW	0.1772	0	Isolated non-canonical cWW pair	D+F	U4 snRNA fragment + U6 snRNA fragment	A	11	C	12	G	13	*	C	68	C	69	U	70		cWW		cWW
146	IL_4WF9_042	4WF9	0.1602	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	1160	A	1161	C	1162	*	G	1081	C	1082	G	1083		cWW	ncWW	cWW
147	IL_1KFO_002	1KFO	0.1455	0	Isolated non-canonical cWW pair	A	RNA (19-mer)	G	11\|\|\|\|8_555	A	12\|\|\|\|8_555	G	13\|\|\|\|8_555	*	C	6	C	7	U	8		cWW	cWW	cWW
148	IL_6IA2_001	6IA2	0.1440	0	Isolated non-canonical cWW pair	A+B	RNA (19-mer)	G	2	A	3	G	4	*	C	16	C	17	C	18		cWW	cWW	cWW
149	IL_7MLW_001	7MLW	0.1881	0	Isolated non-canonical cWW pair	F	Guanidine-I riboswitch	U	4	C	5	G	6	*	C	57	A	58	A	59		cWW	cWWa	cWW
150	IL_8P9A_337	8P9A	0.1518	0	Isolated non-canonical cWW pair	AR	LSU rRNA	C	2889	A	2890	U	2891	*	G	2912	C	2913	G	2914		cWW	ncWWa	cWW
151	IL_2ZKO_001	2ZKO	0.1487	0	Isolated non-canonical cWW pair	C+D	RNA (21-mer)	U	9	U	10	A	11	*	U	9	U	10	A	11		cWW		cWW
152	IL_3GM7_001	3GM7	0.1388	0	Isolated non-canonical cWW pair	G+H	RNA (18-mer)	C	1	U	2	G	3	*	C	16	U	17	G	18		cWW		cWW
153	IL_4E48_005	4E48	0.1430	0	Isolated non-canonical cWW pair	B+A	RNA (20-mer)	C	25	U	26	G	27	*	C	14	U	15	G	16		cWW		cWW
154	IL_5MWI_003	5MWI	0.1427	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	8	U	9	G	10	*	C	17\|\|\|\|4_555	U	18\|\|\|\|4_555	G	19\|\|\|\|4_555		cWW		cWW
155	IL_4P3T_005	4P3T	0.1400	1	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	16	A	18	G	19	*	C	30	C	31	C	32		cWW	cWW	cWW
156	IL_6IA2_004	6IA2	0.1220	0	Isolated non-canonical cWW pair	A+B	RNA (19-mer)	G	11	A	12	G	13	*	C	7	C	8	C	9		cWW	cWW	cWW
157	IL_6IA2_005	6IA2	0.1099	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	G	2	A	3	G	4	*	C	16	C	17	C	18		cWW	cWW	cWW
158	IL_6IA2_002	6IA2	0.1252	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	G	11\|\|A	A	12	G	13	*	C	7	C	8	C	9		cWW	cWW	cWW
159	IL_1Z7F_005	1Z7F	0.1577	0	Isolated non-canonical cWW pair	C+B	RNA (16-mer)	A	26	A	27	U	28	*	A	5	C	6	U	7		cWW	cWW	cWW
160	IL_7KFN_001	7KFN	0.1782	0	Isolated non-canonical cWW pair	B+C	Gli1 8AZ 23mer RNA + Gli1 1W5 23mer RNA	G	14	A	15	G	16	*	C	8	C	9	C	10		cWW	cWW	cWW
161	IL_8E4X_001	8E4X	0.2235	0	Isolated non-canonical cWW pair	C+D	RNA (32-mer)	G	14	A	15	G	16	*	C	17	C	18	C	19		cWW	cWW	cWW
162	IL_9D5J_002	9D5J	0.1834	0	Isolated non-canonical cWW pair	C+D	RNA Top Strand Containing 8-azanebularine (8AZ) + RNA Bottom Strand containing deoxyinosine complementary to a guanosine adjacent to the target site	G	14	A	15	G	16	*	C	17	C	18	C	19		cWW	cWW	cWW
163	IL_3SZX_003	3SZX	0.1359	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	C	7	U	8	G	9	*	C	13	U	14	G	15		cWW	ncWw	cWW
164	IL_8C3A_452	8C3A	0.1951	0	Isolated non-canonical cWW pair	CM	SSU rRNA	G	1198	U	1199	C	1200	*	G	1434	U	1435	U	1436		ncWW	ncWw	cWW
165	IL_1G2J_001	1G2J	0.1908	0	Isolated non-canonical cWW pair	A	RNA (8-mer)	C	3\|\|\|\|12_565	PYY	4\|\|\|\|12_565	G	5\|\|\|\|12_565	*	C	3	PYY	4	G	5		cWW		cWW
166	IL_4KNQ_003	4KNQ	0.1896	0	Isolated non-canonical cWW pair	B	RNA (20-mer)	C	210	C	211	G	212	*	C	210\|\|\|\|4_555	C	211\|\|\|\|4_555	G	212\|\|\|\|4_555		cWW		cWW
167	IL_7ECO_005	7ECO	0.1831	0	Isolated non-canonical cWW pair	E+F	RNA (12-mer)	G	3	U	4	C	5	*	G	8	U	9	C	10		cWW		cWW
168	IL_4J39_001	4J39	0.1960	0	Isolated non-canonical cWW pair	B	RNA (19-mer)	G	9\|\|\|\|4_555	C	10\|\|\|\|4_555	C	11\|\|\|\|4_555	*	G	9	C	10	C	11		cWW		cWW
169	IL_4JGN_003	4JGN	0.1793	0	Isolated non-canonical cWW pair	E	RNA (20-mer)	C	511	U	512	G	513	*	C	511\|\|\|\|4_555	U	512\|\|\|\|4_555	G	513\|\|\|\|4_555		cWW	ncwW	cWW
170	IL_8P9A_308	8P9A	0.0930	0	Isolated non-canonical cWW pair	AR	LSU rRNA	A	2106	A	2107	C	2108	*	G	1940	C	1941	U	1942		cWW	cWW	cWW
171	IL_4X4N_005	4X4N	0.1302	0	Isolated non-canonical cWW pair	D	G70A tRNA minihelix	G	28	A	29	U	30	*	G	2	C	3	C	4		cWW	ncWW	ncWWa
172	IL_7OFW_001	7OFW	0.1546	0	Isolated non-canonical cWW pair	C	RNA (18-mer)	C	9	C	10	G	11	*	C	9\|\|\|\|7_555	C	10\|\|\|\|7_555	G	11\|\|\|\|7_555		cWW		cWW
173	IL_3SZX_002	3SZX	0.1460	0	Isolated non-canonical cWW pair	A+B	RNA (19-mer)	C	10	U	11	G	12	*	C	10	U	11	G	12		cWW	ncWw	cWW
174	IL_4NGF_002	4NGF	0.1538	0	Isolated non-canonical cWW pair	H+G	RNA (17-mer)	G	7	U	8	C	9	*	G	7	U	8	C	9		cWW	ncWw	cWW
175	IL_7ZLQ_001	7ZLQ	0.1359	0	Isolated non-canonical cWW pair	C	RNA (13-mer)	G	5	C	6	C	7	*	G	5\|\|\|\|8_555	C	6\|\|\|\|8_555	C	7\|\|\|\|8_555		cWW		cWW
176	IL_7OFZ_001	7OFZ	0.1374	0	Isolated non-canonical cWW pair	C	RNA (19-mer)	C	9\|\|\|\|7_555	C	10\|\|\|\|7_555	G	11\|\|\|\|7_555	*	C	9	C	10	G	11		cWW		cWW
177	IL_5AY2_003	5AY2	0.1750	0	Isolated non-canonical cWW pair	B+A	RNA (12-mer)	A	3	C	4	U	5	*	A	8	C	9	U	10		cWW		cWW
178	IL_5AY2_001	5AY2	0.1874	0	Isolated non-canonical cWW pair	A+B	RNA (12-mer)	A	3	C	4	U	5	*	A	8	C	9	U	10		cWW		cWW
179	IL_1ZH5_001	1ZH5	0.1749	0	Isolated non-canonical cWW pair	D+C	RNA (9-mer)	C	3	U	4	G	5	*	C	3	U	4	G	5		cWW	ncWw	cWW
180	IL_7ECO_006	7ECO	0.1774	0	Isolated non-canonical cWW pair	F+E	RNA (12-mer)	G	3	U	4	C	5	*	G	8	U	9	C	10		cWW		cWW
181	IL_4V9K_064	4V9K	0.2169	0	Isolated non-canonical cWW pair	AW	tRNA	C	50	A	51	G	52	*	C	62	C	63	G	64		cWW	ncWWa	cWW
182	IL_4PCJ_002	4PCJ	0.3230	0	Isolated non-canonical cWW pair	A	trCUG-3('5)	C	30	U	31	G	32	*	C	4	PSU	5	G	6		cWW		cWW
183	IL_1L9A_009	1L9A	0.3374	0	Isolated non-canonical cWW pair	B	signal recognition particle RNA S domain	G	120	U	121	U	122	*	A	228	U	229	C	230		cWW	ncWw	ncWW
184	IL_5J7L_273	5J7L	0.3453	0	Isolated non-canonical cWW pair	DA	LSU rRNA	A	905	U	906	G	907	*	U	870	U	871	U	872		cWW	cWw	cWW
185	IL_9DFE_033	9DFE	0.1907	0	Isolated non-canonical cWW pair	1A	LSU rRNA	U	963	C	964	C	965	*	G	952	A	953	G	954		cWW	cWW	cWW
186	IL_7A0S_031	7A0S	0.2083	0	Isolated non-canonical cWW pair	X	LSU rRNA	U	974	C	975	C	976	*	G	963	A	964	G	965		cWW	cWW	cWW
187	IL_5C5W_002	5C5W	0.2394	0	Isolated non-canonical cWW pair	A	RNA (19-mer)	U	9\|\|A	C	10\|\|A	A	11\|\|A	*	U	9\|\|A\|\|5_556	C	10\|\|A\|\|5_556	A	11\|\|A\|\|5_556		cWW		cWW
188	IL_8AF0_001	8AF0	0.1773	0	Isolated non-canonical cWW pair	D+C	RNA (19-mer)	A	37	C	38	G	39	*	C	31	C	32	U	33		cWW		cWW
189	IL_7ECK_015	7ECK	0.2160	0	Isolated non-canonical cWW pair	I+J	DNA/RNA (5'-R(GPGPAPCPU)-D(P(CBR))-R(PGPAPAPUPCPC)-3')	A	8	A	9	U	10	*	A	3	C	4	U	5		ncWW	ncWWa	cWW
190	IL_7ECK_013	7ECK	0.2245	0	Isolated non-canonical cWW pair	J+I	DNA/RNA (5'-R(GPGPAPCPU)-D(P(CBR))-R(PGPAPAPUPCPC)-3')	A	8	A	9	U	10	*	A	3	C	4	U	5		cWW	ncWWa	cWW
191	IL_7ECN_001	7ECN	0.2300	0	Isolated non-canonical cWW pair	B+A	RNA (12-mer)	G	8	A	9	C	10	*	G	3	C	4	C	5		cWW		cWW
192	IL_7ECN_002	7ECN	0.3071	0	Isolated non-canonical cWW pair	A+B	RNA (12-mer)	G	8	A	9	C	10	*	G	3	C	4	C	5		cWW		cWW
193	IL_1Z7F_006	1Z7F	0.2685	0	Isolated non-canonical cWW pair	B+C	RNA (16-mer)	A	10	A	11	U	12	*	A	21	C	22	U	23		cWW	cWW	cWW
194	IL_1Y27_001	1Y27	0.2646	0	Isolated non-canonical cWW pair	X	Purine riboswitch	C	43	A	44	A	45	*	U	25	C	26	G	27		cWW	cWW	cWW
195	IL_7KJT_001	7KJT	0.2758	0	Isolated non-canonical cWW pair	A	tRNA	G	2	C	3	C	4	*	G	69	C	70	C	71		cWW		ncWW
196	IL_5ZTM_001	5ZTM	0.3709	0	Isolated non-canonical cWW pair	C	non-coding mRNA sequence roX2	U	118	A	119	G	120	*	C	162	C	163	G	164		cWW	ncWW	cWW
197	IL_5UNE_004	5UNE	0.3003	0	Isolated non-canonical cWW pair	A+B	RNA (47-MER)	U	16	A	17	G	18	*	C	27	A	28	G	29		cWW	cWw	cWW
198	IL_3CUL_008	3CUL	0.3327	0	Isolated non-canonical cWW pair	C	RNA (92-MER)	C	87	A	88	G	89	*	U	57	G	58	G	59		cWW	ncWW	ncWWa
199	IL_1MFQ_003	1MFQ	0.4013	0	Isolated non-canonical cWW pair	A	SRP RNA	U	132	A	133	U	134	*	A	163	G	164	G	165		cWW	ncWW	cWW
200	IL_6CZR_118	6CZR	0.3593	0	Isolated non-canonical cWW pair	1a	SSU rRNA	C	68	G	69	G	70	*	C	94	A	95	G	96		cWW	ncWW	cWW
201	IL_8C3A_149	8C3A	0.3279	1	Isolated non-canonical cWW pair	3	5S rRNA	C	94	A	95	U	96	*	A	84	G	85	G	87		cWW	cWW	cWW
202	IL_8P9A_370	8P9A	0.3267	1	Isolated non-canonical cWW pair	AS	5S rRNA	C	94	A	95	U	96	*	A	84	G	85	G	87		cWW	cWW	cWW
203	IL_6CZR_411	6CZR	0.3099	0	Isolated non-canonical cWW pair	1a	SSU rRNA	C	1395	A	1396	U	1397	*	G	1464	G	1465	G	1466		cWW	cWW	ncWWa
204	IL_5UNE_007	5UNE	0.2974	0	Isolated non-canonical cWW pair	A+B	RNA (47-MER)	G	31	G	32	C	33	*	G	12	G	13	C	14		cWW		ncWW
205	IL_5UNE_003	5UNE	0.2726	0	Isolated non-canonical cWW pair	B+A	RNA (47-MER)	G	31	G	32	C	33	*	G	12	G	13	C	14		cWW		cWW
206	IL_8K85_007	8K85	0.2774	0		A+B	RNA (56-MER)	G	26	A	27	U	28	*	A	23	A	24	C	25		cWW	cWw	cWW
207	IL_8K85_006	8K85	0.3298	0		B+A	RNA (56-MER)	G	26	A	27	U	28	*	A	23	A	24	C	25		cWW	cWw	cWW
208	IL_8P9A_456	8P9A	0.2868	0	Isolated non-canonical cWW pair	sR	SSU rRNA	U	1650	A	1651	C	1652	*	G	1748	A	1749	A	1750		cWW	cWw	cWW
209	IL_4LFB_006	4LFB	0.3745	0	Isolated non-canonical cWW pair	A	SSU rRNA	C	67	G	68	G	69	*	C	99	A	101	G	102		cWW	cWW	cWW
210	IL_5J7L_061	5J7L	0.3401	0	Isolated non-canonical cWW pair	AA	SSU rRNA	C	1412	A	1413	U	1414	*	G	1486	G	1487	G	1488		cWW	cWW	cWW
211	IL_4LFB_059	4LFB	0.3690	0	Isolated non-canonical cWW pair	A	SSU rRNA	C	1412	A	1413	U	1414	*	G	1486	G	1487	G	1488		cWW	cWW	cWW
212	IL_8P9A_354	8P9A	0.3305	0	Isolated non-canonical cWW pair	AR	LSU rRNA	C	3233	A	3234	C	3235	*	G	3252	G	3253	G	3254		cWW	cWW	cWW
213	IL_8P9A_270	8P9A	0.3230	0	Isolated non-canonical cWW pair	AR	LSU rRNA	U	1039	A	1040	U	1041	*	A	1009	G	1010	A	1011		cWW	cWW	cWW
214	IL_8D29_001	8D29	0.3222	0	Isolated non-canonical cWW pair	C	RNA (34-MER)	G	4	A	5	U	6	*	A	29	G	30	C	31		cWW	cWW	ncWW
215	IL_3DIL_006	3DIL	0.3095	0	Isolated non-canonical cWW pair	A	RNA (174-MER)	G	115	G	116	G	117	*	C	137	A	138	C	139		cWW	cWW	cWW
216	IL_3D0U_006	3D0U	0.2950	0	Isolated non-canonical cWW pair	A	Lysine Riboswitch RNA	G	112	G	113	G	114	*	C	134	A	135	C	136		cWW	cWW	cWW
217	IL_5MSF_001	5MSF	0.2819	1	Isolated non-canonical cWW pair	R	RNA (18-mer)	C	13\|\|\|\|P_1	A	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	3\|\|\|\|P_1	G	4\|\|\|\|P_1	G	6\|\|\|\|P_1		cWW	cWW	cWW
218	IL_1U1Y_001	1U1Y	0.2915	1	Isolated non-canonical cWW pair	R	RNA (17-mer)	C	13\|\|\|\|P_1	A	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	3\|\|\|\|P_1	G	4\|\|\|\|P_1	G	6\|\|\|\|P_1		cWW	cWW	cWW
219	IL_7QUA_003	7QUA	0.3560	0	Isolated non-canonical cWW pair	A	RNA (12-mer)	C	1003	G	1004	XMP	1005	*	U	1008\|\|\|\|2_656	A	1009\|\|\|\|2_656	G	1010\|\|\|\|2_656		cWW	cWW	cWWa
220	IL_5DO5_003	5DO5	0.3046	0	Isolated non-canonical cWW pair	A	RNA (12-mer)	U	108\|\|A\|\|2_556	AF2	109\|\|A\|\|2_556	2SG	110\|\|\|\|2_556	*	C	103	G	104	A	105		cWW	cWW	cWW
221	IL_4RBZ_002	4RBZ	0.3165	0	Isolated non-canonical cWW pair	A	RNA (12-mer)	U	108\|\|A\|\|2_656	A	109\|\|A\|\|2_656	G	110\|\|\|\|2_656	*	C	103	G	104	A2M	105		cWW	cWW	cWW
222	IL_4RBY_001	4RBY	0.3382	0	Isolated non-canonical cWW pair	A	RNA (12-mer)	U	108\|\|\|\|2_556	A	109\|\|\|\|2_556	G	110\|\|\|\|2_556	*	C	103	2SG	104	A	105		cWW	cWW	cWW
223	IL_3HHN_004	3HHN	0.3112	0	Isolated non-canonical cWW pair	E	Class I ligase ribozyme, self-ligation product	A	102	A	103	C	104	*	G	87	G	88	U	89		cWW	cWW	cWW
224	IL_3IVK_002	3IVK	0.3519	0	Isolated non-canonical cWW pair	M	class I ligase product	A	102	A	103	C	104	*	G	87	G	88	U	89		cWW	cWW	cWW	ncWW
225	IL_8P9A_461	8P9A	0.3541	0	Isolated non-canonical cWW pair	sR	SSU rRNA	G	1672	G	1673	C	1674	*	G	1727	A	1728	C	1729		cWW	cWW	cWW
226	IL_8P9A_296	8P9A	0.3150	0	Isolated non-canonical cWW pair	AR	LSU rRNA	G	1786	A	1787	C	1788	*	G	1661	G	1662	C	1663		cWW	cWW	cWW
227	IL_2R8S_001	2R8S	0.3075	0	Isolated non-canonical cWW pair	R	P4-P6 RNA RIBOZYME DOMAIN	G	110	G	111	G	112	*	C	208	A	210	C	211		cWW	cWW	cWW
228	IL_4M4O_002	4M4O	0.2762	0	Isolated non-canonical cWW pair	B	RNA (59-MER)	G	46	A	47	C	48	*	G	12	G	13	C	14		cWW	cWW	cWW
229	IL_4M4O_001	4M4O	0.2862	0	Isolated non-canonical cWW pair	B	RNA (59-MER)	A	52	C	53	G	54	*	C	6	A	7	U	8		cWW	cWWa	cWW
230	IL_5UNE_006	5UNE	0.4285	0	Isolated non-canonical cWW pair	B+A	RNA (47-MER)	U	16	A	17	G	18	*	C	27	A	28	G	29		cWW	cWw	cWW
231	IL_4M6D_011	4M6D	0.3213	0	Isolated non-canonical cWW pair	H	aptamer	G	46	A	47	C	48	*	G	12	G	13	C	14		ncWW	cWW	cWW
232	IL_6CZR_122	6CZR	0.3606	0	Isolated non-canonical cWW pair	1a	SSU rRNA	G	196	U	197	G	198	*	C	181	C	182	C	183		cWW	cWW	ncWW
233	IL_1XJR_003	1XJR	0.3888	1	Isolated non-canonical cWW pair	A	s2m RNA	C	16	A	17	C	18	*	G	32	G	34	G	35		cWW	cWW	cWW
234	IL_8P9A_444	8P9A	0.4849	1	Isolated non-canonical cWW pair	sR	SSU rRNA	C	1339	A	1341	C	1342	*	G	1383	A	1384	G	1385		cWW	ncWw	cWW
235	IL_7LYF_004	7LYF	0.3869	1	Isolated non-canonical cWW pair	A	tRNA	G	70	A	71	G	72	*	C	51	G	52	C	54		cWW	cWW	cWW
236	IL_8P9A_418	8P9A	0.2847	1	Isolated non-canonical cWW pair	sR	SSU rRNA	G	868	A	869	C	870	*	G	957	U	958	U	960		ncWW		cWW
237	IL_5T3K_001	5T3K	0.3969	1	Isolated non-canonical cWW pair	B+A	RNA (16-mer)	C	26	A	27	C	28	*	G	7	A	8	G	10		cWW	cWw	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUC*GUC	33
CUG*CUG	29
AAU*ACU	7
CUG*CCG	7
CCG*CCG	7
GAG*CCC	7
CUU*AUG	6
GUU*AUC	5
GCC*GCC	5
UUG*CUG	4
AUG*CCU	4
GAC*GCC	4
GCC*GUC	3
UUU*AUA	3
CUC*GUG	3
CAC*GCG	3
AAC*GCU	3
CAU*GGG	3
GGG*CAC	3
GAC*GGC	3
UUG*UUG	2
UUA*UUG	2
GUC*GCC	2
AUU*ACU	2
GU(5MC)*GUC	2
GUG*CUC	2
GCG*CCU	2
AUA*UCU	2
UUU*AUG	2
UUA*UUA	2
GUC*GUU	2
GAU*ACC	2
UCA*UCA	2
CAG*CCG	2
ACG*CCU	2
ACU*ACU	2
UCC*GAG	2
UAG*CAG	2
CGG*CAG	2
CAU*AGUG	2
GGC*GGC	2
GAU*AAC	2
AAC*GGU	2
UUAUC*GUG	1
GUUU*AUC	1
UCG*CCG	1
CAU*ACG	1
GCU*GAU	1
GUG*CUU	1
CUU*ACG	1
CCC*GUG	1
GCU*GUC	1
CUA*UCG	1
CCU*AAG	1
AUA*UUU	1
GC*GUC	1
ACU*AUU	1
AUU*AUU	1
G(75B)C*GUC	1
U(SUR)C*G(SUR)A	1
GAA*(5BU)CC	1
CCU*ACG	1
GAG*CCU	1
UCG*CAA	1
CAU*GCG	1
GAAG*CCC	1
C(PYY)G*C(PYY)G	1
GAU*GCC	1
CUG*C(PSU)G	1
AUG*UUU	1
CAA*UCG	1
UAG*CCG	1
CAG*UGG	1
UAU*AGG	1
UAC*GAA	1
CAC*GGG	1
UAU*AGA	1
GAU*AGC	1
CAC*GGAG	1
CAC*GG(2PR)G	1
CG(XMP)*UAG	1
U(AF2)(2SG)*CGA	1
UAG*CG(A2M)	1
UAG*C(2SG)A	1
GGC*GAC	1
ACG*CAU	1
GUG*CCC	1
CAC*GAGG	1
CUAC*GAG	1
GAG*CGAC	1
GAC*GUUU	1
CAC*GAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*U	101
A*C	35
C*C	22
U*C	20
A*G	14
G*A	7
C*A	6
C*U	6
A*A	5
A*GU	2
G*G	2
A*GA	2
UAU*U	1
UU*U	1
(5BU)*U	1
(75B)*U	1
(SUR)*(SUR)	1
AA*C	1
(PYY)*(PYY)	1
U*(PSU)	1
A*G(2PR)	1
(AF2)*G	1
A*(2SG)	1
A*AG	1
UA*A	1
A*UU	1
A*AA	1

Release history

Release	3.94
Date	2025-02-26
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Isolated non-canonical cWW pair (235)
(2)
Basepair signature: cWW-cWW-cWW
Heat map statistics: Min 0.01 | Avg 0.32 | Max 0.86

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Coloring options: Nucleotide numbers

Motif IL_10289.2 Version IL_10289.2 of this group appears in releases 3.94 to 3.94 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_10289.2 Version IL_10289.2 of this group appears in releases 3.94 to 3.94

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