IL_3JD5_036

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GGUGCU*AGCAC

Length

11 nucleotides

Bulged bases

3JD5|1|A|G|525

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JD5_036 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3222

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

3JD5|1|A|G|524
3JD5|1|A|G|525
3JD5|1|A|U|526
3JD5|1|A|G|527
3JD5|1|A|C|528
3JD5|1|A|U|529
*
3JD5|1|A|A|825
3JD5|1|A|G|826
3JD5|1|A|C|827
3JD5|1|A|A|828
3JD5|1|A|C|829

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain m

Coiled-coil-helix-coiled-coil-helix domain containing 1