IL_3JD5_044
3D structure
- PDB id
- 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- CAUCAA*UCACGACG
- Length
- 14 nucleotides
- Bulged bases
- 3JD5|1|A|U|111, 3JD5|1|A|C|134
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JD5_044 not in the Motif Atlas
- Geometric match to IL_6CZR_123
- Geometric discrepancy: 0.269
- The information below is about IL_6CZR_123
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.2
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
3JD5|1|A|C|109
3JD5|1|A|A|110
3JD5|1|A|U|111
3JD5|1|A|C|112
3JD5|1|A|A|113
3JD5|1|A|A|114
*
3JD5|1|A|U|131
3JD5|1|A|C|132
3JD5|1|A|A|133
3JD5|1|A|C|134
3JD5|1|A|G|135
3JD5|1|A|A|136
3JD5|1|A|C|137
3JD5|1|A|G|138
Current chains
- Chain A
- 28S ribosomal RNA, mitochondial
Nearby chains
- Chain L
- 28S ribosomal protein S12, mitochondrial
- Chain O
- 28S ribosomal protein S15, mitochondrial
- Chain Q
- 28S ribosomal protein S17, mitochondrial
- Chain j
- 28S ribosomal protein S34, mitochondrial
- Chain n
- Aurora kinase A interacting protein 1
Coloring options: