IL_3JYV_011

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

3JYV|1|A|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JYV_011 not in the Motif Atlas

Geometric match to IL_5J7L_012

Geometric discrepancy: 0.1579

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

3JYV|1|A|G|142
3JYV|1|A|G|143
3JYV|1|A|A|145
3JYV|1|A|U|146
3JYV|1|A|A|147
3JYV|1|A|A|148
3JYV|1|A|C|149
*
3JYV|1|A|G|165
3JYV|1|A|C|166
3JYV|1|A|U|167
3JYV|1|A|A|168
3JYV|1|A|A|169
3JYV|1|A|U|170
3JYV|1|A|A|171
3JYV|1|A|C|172

Current chains

Chain A

18S rRNA

Nearby chains