IL_3JYV_017

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

3JYV|1|A|U|313, 3JYV|1|A|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JYV_017 not in the Motif Atlas

Geometric match to IL_5J7L_014

Geometric discrepancy: 0.1323

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

3JYV|1|A|U|311
3JYV|1|A|A|312
3JYV|1|A|U|313
3JYV|1|A|C|314
3JYV|1|A|A|315
3JYV|1|A|A|316
*
3JYV|1|A|U|348
3JYV|1|A|U|349
3JYV|1|A|U|350
3JYV|1|A|C|351
3JYV|1|A|A|352
3JYV|1|A|A|353
3JYV|1|A|C|354
3JYV|1|A|G|355

Current chains

Chain A

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S23(A)

Chain Q

40S ribosomal protein S11