IL_3JYV_031

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

3JYV|1|A|A|579, 3JYV|1|A|U|581, 3JYV|1|A|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JYV_031 not in the Motif Atlas

Geometric match to IL_8P9A_404

Geometric discrepancy: 0.1628

The information below is about IL_8P9A_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3JYV|1|A|G|562
3JYV|1|A|U|563
3JYV|1|A|G|564
3JYV|1|A|C|565
3JYV|1|A|C|566
3JYV|1|A|A|567
3JYV|1|A|G|568
*
3JYV|1|A|C|575
3JYV|1|A|G|576
3JYV|1|A|G|577
3JYV|1|A|U|578
3JYV|1|A|A|579
3JYV|1|A|A|580
3JYV|1|A|U|581
3JYV|1|A|U|582
3JYV|1|A|C|583

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S3

Chain L

40S ribosomal protein S23(A)