IL_8P9A_404

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8P9A|1|sR|A|579, 8P9A|1|sR|U|581, 8P9A|1|sR|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8P9A|1|sR|G|562
8P9A|1|sR|U|563
8P9A|1|sR|G|564
8P9A|1|sR|C|565
8P9A|1|sR|C|566
8P9A|1|sR|A|567
8P9A|1|sR|G|568
*
8P9A|1|sR|C|575
8P9A|1|sR|G|576
8P9A|1|sR|G|577
8P9A|1|sR|U|578
8P9A|1|sR|A|579
8P9A|1|sR|A|580
8P9A|1|sR|U|581
8P9A|1|sR|U|582
8P9A|1|sR|C|583

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain e0

40S ribosomal protein S30-A

Chain s3

Small ribosomal subunit protein uS3