IL_3JYV_032

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

3JYV|1|A|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JYV_032 not in the Motif Atlas

Geometric match to IL_6CZR_134

Geometric discrepancy: 0.1727

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

3JYV|1|A|G|616
3JYV|1|A|U|617
3JYV|1|A|U|618
3JYV|1|A|A|619
3JYV|1|A|A|620
3JYV|1|A|A|621
3JYV|1|A|A|622
*
3JYV|1|A|U|1101
3JYV|1|A|C|1102

Current chains

Chain A

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S23(A)

Chain Q

40S ribosomal protein S11