IL_3JYV_066

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GG*UCUGU

Length

7 nucleotides

Bulged bases

3JYV|1|A|C|1428, 3JYV|1|A|U|1429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JYV_066 not in the Motif Atlas

Geometric match to IL_5J7L_048

Geometric discrepancy: 0.1908

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

3JYV|1|A|G|1273
3JYV|1|A|G|1274
*
3JYV|1|A|U|1427
3JYV|1|A|C|1428
3JYV|1|A|U|1429
3JYV|1|A|G|1430
3JYV|1|A|U|1431

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S3

Chain J

40S ribosomal protein S20

Chain N

40S ribosomal protein S29(A)