IL_3JYV_068

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JYV_068 not in the Motif Atlas

Geometric match to IL_8PFQ_001

Geometric discrepancy: 0.1577

The information below is about IL_8PFQ_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

3JYV|1|A|U|1287
3JYV|1|A|G|1288
3JYV|1|A|G|1289
*
3JYV|1|A|C|1320
3JYV|1|A|G|1321
3JYV|1|A|A|1322

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S0(A)

Chain C

40S ribosomal protein S3

Chain E

40S ribosomal protein S2