IL_3JYV_072
3D structure
- PDB id
- 3JYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GCCAGCG*UGUGAAAC
- Length
- 15 nucleotides
- Bulged bases
- 3JYV|1|A|U|1520, 3JYV|1|A|G|1521
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JYV_072 not in the Motif Atlas
- Geometric match to IL_5J7L_054
- Geometric discrepancy: 0.3802
- The information below is about IL_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JYV|1|A|G|1478
3JYV|1|A|C|1479
3JYV|1|A|C|1480
3JYV|1|A|A|1481
3JYV|1|A|G|1482
3JYV|1|A|C|1483
3JYV|1|A|G|1484
*
3JYV|1|A|U|1518
3JYV|1|A|G|1519
3JYV|1|A|U|1520
3JYV|1|A|G|1521
3JYV|1|A|A|1522
3JYV|1|A|A|1523
3JYV|1|A|A|1524
3JYV|1|A|C|1525
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain G
- 40S ribosomal protein S5
- Chain I
- 40S ribosomal protein S16(A)
- Chain J
- 40S ribosomal protein S20
- Chain N
- 40S ribosomal protein S29(A)
- Chain T
- s19e protein
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