IL_3JYV_085

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JYV_085 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.2635

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

3JYV|1|A|A|1676
3JYV|1|A|G|1677
3JYV|1|A|G|1678
3JYV|1|A|A|1679
3JYV|1|A|U|1680
*
3JYV|1|A|A|1717
3JYV|1|A|G|1718
3JYV|1|A|A|1719
3JYV|1|A|A|1720
3JYV|1|A|U|1721

Current chains

Chain A

18S rRNA

Nearby chains