IL_3JYV_089

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UCAU*AUA

Length

7 nucleotides

Bulged bases

3JYV|1|A|A|26

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JYV_089 not in the Motif Atlas

Geometric match to IL_4V83_235

Geometric discrepancy: 0.2926

The information below is about IL_4V83_235

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

3JYV|1|A|U|24
3JYV|1|A|C|25
3JYV|1|A|A|26
3JYV|1|A|U|27
*
3JYV|1|A|A|599
3JYV|1|A|U|600
3JYV|1|A|A|601

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S9(A)

Chain L

40S ribosomal protein S23(A)