IL_3KTW_006

3D structure

PDB id

3KTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the SRP19/S-domain SRP RNA complex of Sulfolobus solfataricus

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGAACC*GUGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3KTW_006 not in the Motif Atlas

Homologous match to IL_3KTW_003

Geometric discrepancy: 0.4613

The information below is about IL_3KTW_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91636.1

Basepair signature

cWW-tSH-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

3KTW|1|D|G|193
3KTW|1|D|G|194
3KTW|1|D|G|195
3KTW|1|D|A|196
3KTW|1|D|A|197
3KTW|1|D|C|198
3KTW|1|D|C|199
*
3KTW|1|D|G|224
3KTW|1|D|U|225
3KTW|1|D|G|226
3KTW|1|D|C|227

Current chains

Chain D

SRP RNA

Nearby chains

Chain A

Signal recognition particle 19 kDa protein

Chain C

SRP RNA