IL_3LRR_001

3D structure

PDB id

3LRR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of human RIG-I CTD bound to a 12 bp AU rich 5' ppp dsRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.15 Å

Loop

Sequence

AUA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUA,UAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3LRR_001 not in the Motif Atlas

Geometric match to IL_4V88_395

Geometric discrepancy: 0.1767

The information below is about IL_4V88_395

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

3LRR|1|C|A|7
3LRR|1|C|U|8
3LRR|1|C|A|9
*
3LRR|1|D|U|4
3LRR|1|D|A|5
3LRR|1|D|U|6

Current chains

Chain C

RNA (5'-R(*(ATP)P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*U)-3')

Chain D

RNA (5'-R(*(ATP)P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*U)-3')

Nearby chains

Chain A

Probable ATP-dependent RNA helicase DDX58

Chain B

Probable ATP-dependent RNA helicase DDX58