IL_3NDB_007

3D structure

PDB id

3NDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a signal sequence bound to the signal recognition particle

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAACCC*GUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_44874.1

Basepair signature

cWW-tSH-tHW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

3NDB|1|M|C|192
3NDB|1|M|G|193
3NDB|1|M|A|194
3NDB|1|M|A|195
3NDB|1|M|C|196
3NDB|1|M|C|197
3NDB|1|M|C|198
*
3NDB|1|M|G|223
3NDB|1|M|U|224
3NDB|1|M|A|225
3NDB|1|M|G|226

Current chains

Chain M

SRP RNA

Nearby chains

Chain B

Signal recognition 54 kDa protein