IL_3O30_031

3D structure

PDB id

3O30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome. This entry consists of the 40S subunit of the second 80S in the asymmetric unit.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

3O30|1|1|A|555, 3O30|1|1|A|556, 3O30|1|1|G|557

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30092.1

Basepair signature

Not available

Number of instances in this motif group

4

Unit IDs

3O30|1|1|A|550
3O30|1|1|G|551
3O30|1|1|G|552
3O30|1|1|G|553
3O30|1|1|C|554
3O30|1|1|A|555
3O30|1|1|A|556
3O30|1|1|G|557
3O30|1|1|U|558
3O30|1|1|C|559
*
3O30|1|1|G|586
3O30|1|1|C|587
3O30|1|1|U|588

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S2

Chain E

40S ribosomal protein S9-A

Chain P

40S ribosomal protein S23