IL_3O30_059

3D structure

PDB id

3O30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome. This entry consists of the 40S subunit of the second 80S in the asymmetric unit.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

3O30|1|1|C|1158, 3O30|1|1|C|1159, 3O30|1|1|C|1618, 3O30|1|1|C|1619

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70242.1

Basepair signature

Not available

Number of instances in this motif group

9

Unit IDs

3O30|1|1|A|1157
3O30|1|1|C|1158
3O30|1|1|C|1159
3O30|1|1|A|1160
*
3O30|1|1|U|1617
3O30|1|1|C|1618
3O30|1|1|C|1619
3O30|1|1|C|1620
3O30|1|1|U|1621

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S5

Chain J

40S ribosomal protein S16

Chain R

40S ribosomal protein S28-A