Motif IL_70242.1 Version IL_70242.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-2 | 1-6 | 3-6 | 4-5 | 4-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_003 | 2QBG | 0.5538 | 0 | A | G | 51 | A | 52 | A | 53 | G | 54 | * | C | 30 | C | 31 | cWW | ncWS | cWW | |||
| 2 | IL_2AW7_013 | 2AW7 | 0.5169 | 0 | A | G | 203 | G | 204 | A | 205 | C | 206 | * | G | 213 | C | 214 | cWW | ncWS | cWW | |||
| 3 | IL_1FJG_039 | 1FJG | 0.3192 | 1 | Minor groove platform (H) | A | G | 993 | C | 995 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | cWS | cWW | ||
| 4 | IL_2AW7_007 | 2AW7 | 0.2711 | 0 | A | U | 70 | A | 71 | A | 72 | C | 73 | * | G | 97 | A | 98 | cWW | cWS | cWW | |||
| 5 | IL_2AW7_054 | 2AW7 | 0.0000 | 0 | A | C | 1129 | A | 1130 | G | 1131 | C | 1132 | * | G | 1142 | G | 1143 | cWW | ncWS | cWW | |||
| 6 | IL_3O30_059 | 3O30 | 0.2834 | 3 | 1 | U | 1617 | C | 1619 | C | 1620 | U | 1621 | * | A | 1157 | A | 1160 | cWW | cWW | ||||
| 7 | IL_2AW7_044 | 2AW7 | 0.3337 | 2 | A | U | 1380 | C | 1382 | C | 1383 | C | 1384 | * | G | 933 | A | 935 | ncSH | cWW | cWS | cWW | ||
| 8 | IL_2AW7_046 | 2AW7 | 0.3878 | 1 | A | G | 993 | C | 995 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | cWS | cWW | |||
| 9 | IL_3MUR_005 | 3MUR | 0.4528 | 0 | R | A | 61 | A | 62 | A | 63 | C | 64 | * | G | 76 | U | 77 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACAU*AC | 2 |
| GAAG*CC | 1 |
| GGAC*GC | 1 |
| UAAC*GA | 1 |
| CAGC*GG | 1 |
| UCCCU*ACCA | 1 |
| UUCCC*GCA | 1 |
| AAAC*GU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA* | 3 |
| ACA* | 2 |
| GA* | 1 |
| AG* | 1 |
| CCC*CC | 1 |
| UCC*C | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_70242.1 | Only in the parent motif |
|---|---|---|---|
| IL_87014.1 Compare | IL_1FJG_039 | IL_2AW7_054, IL_3MUR_005, IL_2AW7_044, IL_2AW7_046, IL_2AW7_013, IL_3O30_059, IL_2AW7_007, IL_2QBG_003 | IL_3F1H_068, IL_2ZJR_027, IL_2ZJR_003, IL_3F1H_056, IL_2ZJR_067, IL_1FJG_051, IL_1S72_066 |
| IL_12437.1 Compare | IL_3MUR_005 | IL_1FJG_039, IL_2AW7_054, IL_2AW7_044, IL_2AW7_046, IL_2AW7_013, IL_3O30_059, IL_2AW7_007, IL_2QBG_003 | IL_3F1H_110, IL_2ZJR_105 |
Children motifs
| Child motif | Common motif instances | Only in IL_70242.1 | Only in the child motif |
|---|---|---|---|
| IL_73000.1 Compare | IL_1FJG_039, IL_2AW7_013, IL_2AW7_054, IL_2AW7_044, IL_2QBG_003 | IL_3O30_059, IL_2AW7_007, IL_3MUR_005, IL_2AW7_046 | IL_3IWN_005, IL_4A1B_066, IL_3UCZ_004 |
| IL_94430.1 Compare | IL_2AW7_007, IL_2AW7_046 | IL_1FJG_039, IL_2AW7_054, IL_3MUR_005, IL_2AW7_044, IL_2AW7_013, IL_3O30_059, IL_2QBG_003 | IL_2QBG_072, IL_3UXR_032, IL_3UXR_055, IL_2ZJR_105, IL_3Q1Q_003, IL_3UXR_068, IL_2ZJR_067, IL_4A1B_086, IL_2XXA_013, IL_1S72_066, IL_2XXA_006, IL_3U5H_145 |
- Annotations
-
- (8)
- Minor groove platform (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.18 | Avg 0.40 | Max 0.67
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