IL_3O58_080

3D structure

PDB id

3O58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome. This entry consists of the 60S subunit of the first 80S in the asymmetric unit.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUAAG*CGAAAG

Length

11 nucleotides

Bulged bases

3O58|1|1|A|1588, 3O58|1|1|A|1589

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31491.1

Basepair signature

Not available

Number of instances in this motif group

13

Unit IDs

3O58|1|1|C|1532
3O58|1|1|U|1533
3O58|1|1|A|1534
3O58|1|1|A|1535
3O58|1|1|G|1536
*
3O58|1|1|C|1585
3O58|1|1|G|1586
3O58|1|1|A|1587
3O58|1|1|A|1588
3O58|1|1|A|1589
3O58|1|1|G|1590

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain B

60S ribosomal protein L2

Chain d

60S ribosomal protein L37-A

Chain e

60S ribosomal protein L39