Motif IL_31491.1 Version IL_31491.1 of this group appears in releases 0.5 to 0.5

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3		4		5	break		6		7		8		9	1-9	2-8	4-7	5-6
1	IL_3PYO_051	3PYO	0.2991	1		A	C	1577	U	1578	A	1579	A	1580	G	1581	*	C	1417	G	1418	A	1419	G	1421	cWW	tWH	tHS	cWW
2	IL_3PYO_035	3PYO	0.2870	1		A	C	998	U	999	A	1000	A	1001	G	1002	*	C	1153	G	1154	A	1155	G	1157	cWW	tWH	tHS	cWW
3	IL_3O58_080	3O58	0.2292	2		1	C	1532	U	1533	A	1534	A	1535	G	1536	*	C	1585	G	1586	A	1587	G	1590	cWW	tWH	tHS	cWW
4	IL_2XXA_007	2XXA	0.1523	3	UAA/GAN	F	A	62	U	63	A	64	A	65	G	66	*	C	31	G	32	A	33	U	37	cWW	ntWH	tHS	cWW
5	IL_2QBG_051	2QBG	0.1753	1		B	C	1351	U	1352	A	1353	A	1354	G	1355	*	C	1376	G	1377	A	1378	G	1380	cWW	tWH	tHS	cWW
6	IL_1S72_052	1S72	0.1429	3	UAA/GAN (H)	0	C	1456	U	1457	A	1458	A	1459	G	1460	*	C	1483	G	1484	A	1485	G	1489	cWW	tWH	tHS	cWW
7	IL_3PYO_048	3PYO	0.0000	1		A	C	1351	U	1352	A	1353	A	1354	G	1355	*	C	1376	G	1377	A	1378	G	1380	cWW	tWH	tHS	cWW
8	IL_2XXA_014	2XXA	0.1104	3		G	A	62	U	63	A	64	A	65	G	66	*	C	31	G	32	A	33	U	37	cWW	ntWH	ntHS	cWW
9	IL_2ZJR_052	2ZJR	0.2023	1	UAA/GAN variation (H)	X	C	1593	U	1594	A	1595	A	1596	A	1597	*	U	1431	G	1432	A	1433	G	1435	cWW	tWH	tHS	cWW
10	IL_2ZJR_032	2ZJR	0.2252	1	UAA/GAN (H)	X	C	1009	U	1010	A	1011	A	1012	G	1013	*	C	1164	G	1165	A	1166	G	1168	cWW	tWH	tHS	cWW
11	IL_1S72_038	1S72	0.2085	1	UAA/GAN (H)	0	U	1095	U	1096	A	1097	A	1098	G	1099	*	C	1257	G	1258	A	1259	A	1261	cWW	tWH	tHS	cWW
12	IL_2QBG_036	2QBG	0.2218	1		B	C	998	U	999	A	1000	A	1001	G	1002	*	C	1153	G	1154	A	1155	G	1157	cWW	tWH	tHS	cWW
13	IL_2QBG_054	2QBG	0.3894	1		B	C	1577	U	1578	A	1579	A	1580	G	1581	*	C	1417	G	1418	A	1419	G	1421	cWW	tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAAG*CGAAG	5
CUAAG*CGAUG	2
AUAAG*CGAACCU	2
CUAAG*CGAAAG	1
CUAAG*CGAAAUG	1
CUAAA*UGAUG	1
UUAAG*CGAGA	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAA*GAA	5
UAA*GAU	3
UAA*GAACC	2
UAA*GAAA	1
UAA*GAAAU	1
UAA*GAG	1

Release history

Release	0.5
Date	2011-12-08
Status	New id, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_31491.1	Only in the parent motif
IL_63717.2 Compare	IL_1S72_038, IL_2ZJR_052, IL_1S72_052, IL_2ZJR_032	IL_2QBG_036, IL_3O58_080, IL_2QBG_054, IL_2QBG_051, IL_3PYO_048, IL_2XXA_007, IL_3PYO_035, IL_3PYO_051, IL_2XXA_014	IL_1S72_092, IL_3F1H_050, IL_3F1H_035

Children motifs

Child motif	Common motif instances	Only in IL_31491.1	Only in the child motif
IL_93424.1 Compare	IL_2QBG_036, IL_2ZJR_052, IL_1S72_052, IL_2QBG_054, IL_1S72_038, IL_2QBG_051, IL_2ZJR_032, IL_2XXA_007, IL_2XXA_014	IL_3PYO_035, IL_3PYO_051, IL_3PYO_048, IL_3O58_080	IL_2XZM_007, IL_3UXR_049, IL_3UXR_036, IL_3U5H_069, IL_1S72_092, IL_1X8W_006, IL_3UXR_057, IL_3U5H_024, IL_3UXR_052, IL_3U5H_124, IL_4A1B_122, IL_3U5H_126, IL_4A1B_126, IL_4A1B_067

Annotations: (8)
UAA/GAN (H) (3)
UAA/GAN (1)
UAA/GAN variation (H) (1)
Basepair signature
Heat map statistics: Min 0.08 | Avg 0.24 | Max 0.44

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Coloring options: Nucleotide numbers

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